<?xml version='1.0'?><rss version="2.0" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:georss="http://www.georss.org/georss" xmlns:atom="http://www.w3.org/2005/Atom" >
<channel>
	<title><![CDATA[BOL: Results for "Construction"]]></title>
	<link>https://bioinformaticsonline.com/search?q=Construction&amp;search_type=all</link>
	<atom:link href="https://bioinformaticsonline.com/search?q=Construction&amp;search_type=all" rel="self" type="application/rss+xml" />
	<description><![CDATA[]]></description>
	
	
<item>
	<guid isPermaLink='true'>https://bioinformaticsonline.com/blog/view/4574/tools-to-detect-synteny-blocks-regions-among-multiple-genomes</guid>
	<pubDate>Mon, 16 Sep 2013 17:12:02 -0500</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/4574/tools-to-detect-synteny-blocks-regions-among-multiple-genomes</link>
	<title><![CDATA[Tools to detect synteny blocks regions among multiple genomes]]></title>
	<description><![CDATA[...to be an efficient and accurate automated tool for defining HSBs using datasets that may contain minor errors resulting from limitations in map <strong class="search-highlight search-highlight-color1">construction</strong> methodologies.
CoGe (http://...]]></description>
</item>

<item>
	<guid isPermaLink='true'>https://bioinformaticsonline.com/blog/view/34707/string-graph-based-genome-assembly-software-and-tools</guid>
	<pubDate>Tue, 19 Dec 2017 17:17:38 -0600</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/34707/string-graph-based-genome-assembly-software-and-tools</link>
	<title><![CDATA[String graph based genome assembly software and tools !]]></title>
	<description><![CDATA[...not rely on de Bruijn graphs, and instead employs a different graph <strong class="search-highlight search-highlight-color1">construction</strong> approach called &lsquo;string...This paper describes the String Graph concept.
ii)&nbsp;Efficient <strong class="search-highlight search-highlight-color1">construction</strong> of an assembly string graph u...]]></description>
</item>

<item>
	<guid isPermaLink='true'>https://bioinformaticsonline.com/bookmarks/view/12944/orione-%E2%80%93-a-web-based-framework-for-ngs-analysis-in-microbiology</guid>
	<pubDate>Wed, 23 Jul 2014 06:43:03 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/12944/orione-%E2%80%93-a-web-based-framework-for-ngs-analysis-in-microbiology</link>
	<title><![CDATA[Orione – a web-based framework for NGS analysis in microbiology]]></title>
	<description><![CDATA[...sity of tools covering bacterial resequencing, de novo assembly, scaffolding, bacterial RNA-Seq, gene annotation and metagenomics. However, the <strong class="search-highlight search-highlight-color1">construction</strong> of computational pipelines th...]]></description>
</item>

<item>
	<guid isPermaLink='true'>https://bioinformaticsonline.com/bookmarks/view/30829/mercator</guid>
	<pubDate>Mon, 06 Feb 2017 04:20:36 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/30829/mercator</link>
	<title><![CDATA[Mercator]]></title>
	<description><![CDATA[...tegy in building homology maps is to use exons that are orthologous in multiple genomes as map "anchors." Given K genomes, the steps in the map <strong class="search-highlight search-highlight-color1">construction</strong> are as follows:

For each g...]]></description>
</item>

<item>
	<guid isPermaLink='true'>https://bioinformaticsonline.com/pages/view/30440/genome-assembly-tools-and-software-part2</guid>
	<pubDate>Tue, 27 Dec 2016 16:14:35 -0600</pubDate>
	<link>https://bioinformaticsonline.com/pages/view/30440/genome-assembly-tools-and-software-part2</link>
	<title><![CDATA[Genome Assembly Tools and Software - PART2 !!]]></title>
	<description><![CDATA[...semblySAM employs a novel method to localize and assemble RNA-seq reads into RNA transcript sequences.

StringGraph beta &ndash; String Graph <strong class="search-highlight search-highlight-color1">Construction</strong> Using Incremental HashingStri...]]></description>
</item>

<item>
	<guid isPermaLink='true'>https://bioinformaticsonline.com/pages/view/901/bioinformatics-definitions</guid>
	<pubDate>Mon, 15 Jul 2013 03:01:07 -0500</pubDate>
	<link>https://bioinformaticsonline.com/pages/view/901/bioinformatics-definitions</link>
	<title><![CDATA[Bioinformatics Definitions]]></title>
	<description><![CDATA[...equence alignment, protein 3D structure alignment, phylogenetic tree <strong class="search-highlight search-highlight-color1">construction</strong>, prediction and classificatio...introduction of PsiBLAST [3];
studying evolutionary aspects, by the <strong class="search-highlight search-highlight-color1">construction</strong> of phylogenetic trees from th...]]></description>
</item>

<item>
	<guid isPermaLink='true'>https://bioinformaticsonline.com/pages/view/923/phylogenetic-for-bioinformatics</guid>
	<pubDate>Tue, 16 Jul 2013 03:50:30 -0500</pubDate>
	<link>https://bioinformaticsonline.com/pages/view/923/phylogenetic-for-bioinformatics</link>
	<title><![CDATA[Phylogenetic for Bioinformatics]]></title>
	<description><![CDATA[...mporia.edu/mooredwi/nathist/chap1.htm
Algorithms for Phylogenetic Re<strong class="search-highlight search-highlight-color1">construction</strong>s:http://lectures.molgen.mpg.d.../teaching/SBseminar/manual.pdf
Web sites providing software for the <strong class="search-highlight search-highlight-color1">construction</strong> of phylogenetic trees

BioE...]]></description>
</item>

<item>
	<guid isPermaLink='false'>14365</guid>
	<pubDate>Mon, 25 Aug 2014 06:43:28 -0500</pubDate>
	<link>https://bioinformaticsonline.com/thewire/view/14365</link>
	<title><![CDATA[Wire post by Jitendra Narayan]]></title>
	<description><![CDATA[Mercator that constructs orthology maps between multiple whole genomes https://www.biostat.wisc.edu/~cdewey/mercator/ #Synteny #Orthology #Map #<strong class="search-highlight search-highlight-color1">Construction</strong> #Alignment]]></description>
</item>

<item>
	<guid isPermaLink='false'>24385</guid>
	<pubDate>Thu, 10 Sep 2015 20:28:32 -0500</pubDate>
	<link>https://bioinformaticsonline.com/thewire/view/24385</link>
	<title><![CDATA[Wire post by Jitendra Narayan]]></title>
	<description><![CDATA[3D genome data and tool http://bengal.missouri.edu/~chengji/nsf_career.html #Chromosome #HiC #Analysis #<strong class="search-highlight search-highlight-color1">Construction</strong> #Visualization #Modeling #3D #Genome #Structures]]></description>
</item>

<item>
	<guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/843/structural-polymorphism-analysis-from-ngs-data</guid>
	<pubDate>Sat, 13 Jul 2013 17:12:47 -0500</pubDate>
	<link>https://bioinformaticsonline.com/opportunity/view/843/structural-polymorphism-analysis-from-ngs-data</link>
	<title><![CDATA[Structural polymorphism analysis from NGS data]]></title>
	<description><![CDATA[...of the detection of polymorphisms including structural variants, of the comparison of multiple and diverse genomes of a same species and of the <strong class="search-highlight search-highlight-color1">construction</strong> of pan- and core-genomes. The...]]></description>
</item>

<item>
	<guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/1490/bioinformatics-jrf-at-iiser-mohali</guid>
	<pubDate>Thu, 08 Aug 2013 15:56:02 -0500</pubDate>
	<link>https://bioinformaticsonline.com/opportunity/view/1490/bioinformatics-jrf-at-iiser-mohali</link>
	<title><![CDATA[Bioinformatics JRF at IISER MOHALI]]></title>
	<description><![CDATA[...ion and characterization of transcription factors (TFs) from the Arabidopsis shoot apical meristem stem cell niche using genomic approaches and <strong class="search-highlight search-highlight-color1">construction</strong> of a gene regulatory network...]]></description>
</item>

<item>
	<guid isPermaLink='true'>https://bioinformaticsonline.com/snippets/view/37263/running-trinity-on-rna-seq</guid>
	<pubDate>Mon, 09 Jul 2018 06:05:43 -0500</pubDate>
	<link>https://bioinformaticsonline.com/snippets/view/37263/running-trinity-on-rna-seq</link>
	<title><![CDATA[Running Trinity on RNA-seq !]]></title>
	<description><![CDATA[...-
--------------- Inchworm ---------------------
-- (Linear contig <strong class="search-highlight search-highlight-color1">construction</strong> from k-mers) --
------------...s -------------------------
-- (Contig Clustering & de Bruijn Graph <strong class="search-highlight search-highlight-color1">Construction</strong>) --
------------------------...]]></description>
</item>

<item>
	<guid isPermaLink='true'>https://bioinformaticsonline.com/snippets/view/42640/set-up-wgd-environment-using-conda</guid>
	<pubDate>Sun, 17 Jan 2021 19:24:15 -0600</pubDate>
	<link>https://bioinformaticsonline.com/snippets/view/42640/set-up-wgd-environment-using-conda</link>
	<title><![CDATA[Set up WGD environment using conda !]]></title>
	<description><![CDATA[...age and exit.

Commands:
  dmd  All-vs.-all diamond blastp + MCL clustering.
  kde  Fit a KDE to a Ks distribution.
  ksd  Ks distribution <strong class="search-highlight search-highlight-color1">construction</strong>.
  mcl  All-vs.-all blastp +...]]></description>
</item>

<item>
	<guid isPermaLink='true'>https://bioinformaticsonline.com/thewire/view/14365</guid>
	<pubDate>Mon, 25 Aug 2014 06:43:28 -0500</pubDate>
	<link>https://bioinformaticsonline.com/thewire/view/14365</link>
	<title><![CDATA[]]></title>
	<description><![CDATA[Mercator that constructs orthology maps between multiple whole genomes https://www.biostat.wisc.edu/~cdewey/mercator/ #Synteny #Orthology #Map #Construction #Alignment]]></description>
</item>

<item>
	<guid isPermaLink='true'>https://bioinformaticsonline.com/thewire/view/24385</guid>
	<pubDate>Thu, 10 Sep 2015 20:28:32 -0500</pubDate>
	<link>https://bioinformaticsonline.com/thewire/view/24385</link>
	<title><![CDATA[]]></title>
	<description><![CDATA[3D genome data and tool http://bengal.missouri.edu/~chengji/nsf_career.html #Chromosome #HiC #Analysis #Construction #Visualization #Modeling #3D #Genome #Structures]]></description>
</item>

<item>
	<guid isPermaLink='true'>https://bioinformaticsonline.com/blog/view/4574/tools-to-detect-synteny-blocks-regions-among-multiple-genomes#annotation-3903</guid>
	<pubDate>Tue, 08 Dec 2020 01:34:18 -0600</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/4574/tools-to-detect-synteny-blocks-regions-among-multiple-genomes#annotation-3903</link>
	<title><![CDATA[Comment on "Tools to detect synteny blocks regions among multiple genomes" by LEGE]]></title>
	<description><![CDATA[halSynteny: a fast, easy-to-use conserved synteny block <strong class="search-highlight search-highlight-color1">construction</strong> method for multiple whole-genome alignments&nbsp;https://pubmed.ncbi.nlm.nih.gov/32463100/]]></description>
</item>

<item>
	<guid isPermaLink='true'>https://bioinformaticsonline.com/blog/view/4574/tools-to-detect-synteny-blocks-regions-among-multiple-genomes#annotation-3842</guid>
	<pubDate>Fri, 05 Jun 2020 00:23:00 -0500</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/4574/tools-to-detect-synteny-blocks-regions-among-multiple-genomes#annotation-3842</link>
	<title><![CDATA[Comment on "Tools to detect synteny blocks regions among multiple genomes" by Jit]]></title>
	<description><![CDATA[halSynteny is the latest input in computational synteny&nbsp;
halSynteny: a fast, easy-to-use conserved synteny block <strong class="search-highlight search-highlight-color1">construction</strong> method for multiple whole-genome alignments
https://a...]]></description>
</item>

</channel>
</rss>