BOL: Results for "Genome"

Jitendra Narayan

Fri, 05 Jul 2013 05:05:26 -0500

About me: ...eline, and algorithms to harness the huge amount of biological data (genomes, epigenomes, transcriptomes, proteomes,...ification-and-analysis-of-evolutionary-breakpoint-regions-in-amniote-genomes(57ec9f04-1029-4f53-a757-c63b...

Shruti Paniwala

Tue, 21 Jan 2014 04:35:18 -0600

About me: ...we see new instrument with higher throughput like BGI’s DNBSEQ-T7 at 60 genomes per day. At the world’s rate...it would take all the CPUs in every cloud and more than 200 days to run genome analysis. "

Five points for bioinformatics software/tools

Mon, 05 Aug 2013 04:12:32 -0500

...s does not absolve you of the need to actually read and research the type of analysis that you are doing. This is particularly true in the case of genome assembly and annotation. At...

Installing Perl GD Module

Mon, 22 Jul 2013 14:02:01 -0500

In comparative genome analysis work, we usually compare more than two genomes and looks for syntenic regions amongst them. In my research...igned to provide a visual means for simultaneously comparing genomes of multiple amniote species....

List of popular bioinformatics software/tools

Tue, 16 Jul 2013 14:30:30 -0500

In current genome era, our day to day work is to handle the huge geneome sequences, expression data, several other datasets. This link provide a comprehensive list of commonly used sofware/tools.

Online Bioinformatics Courses

Wed, 17 Jul 2013 12:59:59 -0500

...derlying the following fundamental topics in bioinformatics: assembling genomes, comparing DNA and protein s..., analyzing gene expression, constructing evolutionary trees, analyzing genome rearrangements, and identifyi...

Bioinformatician kidnaped !!!

Thu, 17 Oct 2013 05:10:23 -0500

Some fish kidnaped a bioinformatician for their genome analysis.

Alien Spy !!!

Wed, 30 Oct 2013 19:12:41 -0500

Alien spy are looking for human genome sequences ..

BioRuby :Ruby packages for biologist

Mon, 15 Jul 2013 01:36:28 -0500

...ioRuby project provides an integrated environment in bioinformatics for the Ruby language. This project is supported by University of Tokyo (Human Genome Center), Kyoto University(Bio...

Bioinformatics Articles links

Sat, 10 Aug 2013 07:44:34 -0500

...ics curriculum. By Russ Altman. Human Genome Research A description of the Human Genome Project. Retooling for Bioin...a WWW search. Understanding the human genome By D. L. Brutlag, in&nbs...sp;April 2001 Bioinformatics U., Genome Technology, September, 2001&n...

BioProgramming

Sun, 14 Jul 2013 16:29:53 -0500

The completion of the first human genome drafts was just a start of the modern DNA...ion sequencing” (HT-NGS). The decreasing genome sequencing cost and desire to...cally suitable language to handle ever growing genome or protein sequences. The ne...

Bioinformatics Definitions

Mon, 15 Jul 2013 03:01:07 -0500

...nsive electronic databases on genomes and protein sequences, and t...s on three types of datasets: genome sequences, macromolecular str...s DataBase for the C. elegans genome, FLYBASE for D. melanogaster...lds can be analysed for whole genomes. Protein–protein inter...

Wire post by Rahul Agarwal

Wed, 17 Sep 2014 13:00:50 -0500

VISTA is a comprehensive suite of programs and databases for comparative analysis of genomic sequences !http://genome.lbl.gov/vista/index.shtml #Genomics #Seq

Wire post by Jitendra Narayan

Wed, 28 Aug 2013 15:33:30 -0500

Generate N base genome: perl -e '@b=qw/A T G C/;print ">Genome\n";while($l

700,000 year old horse!!!

Wed, 27 Nov 2013 12:13:36 -0600

...ticles/5052/20131123/oldest-dna-sequenced-done-breakthrough-technology.htm http://geogenetics.ku.dk/latest-news/a-700.000-year-old-horse-gets-its-genome-sequenced/

UK Genome Science Meeting, sept 2nd-4th, 2013

Mon, 12 Aug 2013 12:03:21 -0500

Following the success of the last three years' UK Next Gen Sequencing meetings at Nottingham, the newly named UK Genome Science meeting aims to bring together experts from around the...

Livestock Functional Genomics Summer School (LFG 2013)

Fri, 02 Aug 2013 09:57:37 -0500

...e participant should understand the basis and the context of livestock big molecular data, and be able to manipulate high density genotypes, whole genome sequences and transcriptome d...

2013 NextGen Genomics & Bioinformatics Technologies (NGBT) Conference, New Delhi, INDIA

Thu, 08 Aug 2013 16:21:16 -0500

...lthcare conference. In the ten years since the first human reference genome was completed for US$3 billio...ly changed leading to great reduction in sequencing cost. Today a human genome can be sequenced for under US...

Papenfuss Lab

Sun, 14 Jul 2013 12:22:28 -0500

The human genome project and similar projects in disease-causing organisms such as Plasmodium...uence data in cancer Methods for analysis of structural variation in cancer genomes Next Generation sequencing...

Smyth Lab

Sun, 14 Jul 2013 12:26:18 -0500

Statistical functional genomics in experimental medicine The genome projects and the accelerated development of high-throughput genomic technologies such as microarrays have revoluti...

Bioinformatician become producer/director !!!

Mon, 12 Aug 2013 18:19:31 -0500

...will be like this.... BLAST : Eak khoj Munna Bhai Promoter Gene se Genome tak. Maine BLAST kiya. NCBI...Search Kare Bioinformatician No.1 Mera Naam Tool Developer Hum Apke Genome Mein Rehte Hein Do Seq...

What a bioinformatician always dream for ???

Tue, 03 Sep 2013 15:31:17 -0500

...ell established bioinformatics labs with SGI(silicon graphics interface) License of all commercial softwares. Complete, and fully assembled genome of the girl :P A girl/boy wi...

Bioinformatics -- Understanding of living systems through information science

Wed, 14 Aug 2013 11:50:17 -0500

...e life. One is example is the genome. In all organisms, DNA contai...ation, and this is called the genome. But the amount of informatio...erved between species. If the genome is considered as a long text,...as decoded the natto bacillus genome, through analysis using Keio'...

Translational Bioinformatics: Transforming 300 Billion Points of Data

Tue, 20 Aug 2013 19:03:47 -0500

...hington DC Local Description: There is an urgent need to translate genome-era discoveries into clinical...sease in type 2 diabetes, and evaluating patients presenting with whole genomes sequenced. The NIH Wednesd...

Python script to download covid genome !

Fri, 26 Mar 2021 07:01:29 -0500

#!/usr/bin/env python3 # these are the publicly available "complete" sequences # https://www.gisaid.org/ has more (1200?), but they require you to sign up import...

Download genome using NCBI esearch command line !

Fri, 30 Apr 2021 00:31:09 -0500

#Download using command line "NC_005956.1" / "CP003784.1" esearch -db nucleotide -query "NC_005956.1" | efetch -format fasta > seq1.fa esearch -db nucleotide -quer...

Which of the followings are the best place to study Bioinformatics ?

Sun, 28 Dec 2014 00:20:30 -0600

Bioinformatics is a major growth area and qualified Bioinformaticians are in high demand. An explosion in biological data has resulted from genome projects, next generation sequencing...

Genome Hackers

Tue, 09 Jul 2013 16:40:07 -0500

INTIMATE secrets hidden in your DNA could be stolen without you even realising. By taking a glass from which you have drunk, a "genome hacker" could obtain a comprehensive scan of your genome, revealing DNA variants that help determine your susceptibility to a wide range of diseases, from a commo...

New born babies get ready to know their whole genome soon!!!

Thu, 05 Sep 2013 07:24:02 -0500

USA launch a pilot projects to examine medical information of newborn baby, which are being funded by the Eunice Kennedy Shriver National Institute of Child Health and Human Development (NICHD) and the National Human Genome Research Institute (NHGRI), both parts of the National Institutes of Heal...

Comment on "Short-read assembly using Spades !" by BioStar

Fri, 17 Mar 2023 00:17:37 -0500

...is the process of constructing a genome sequence from a large number...ing reads. SPAdes (St. Petersburg genome assembler) is a popular softw...the directory where the assembled genome will be saved, "forward_reads...ess and accuracy of the assembled genome by comparing it to reference...

Comment on "Read Simulators" by BioStar

Fri, 17 Mar 2023 00:16:19 -0500

...short read simulator that generates synthetic reads based on the whole genome sequencing technology. It can...is a short read simulator that can generate synthetic reads from whole genome sequencing data. It is design...