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	<title><![CDATA[BOL: Results for "HTSlib"]]></title>
	<link>https://bioinformaticsonline.com/search?q=HTSlib&amp;search_type=all</link>
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	<description><![CDATA[]]></description>
	
	
<item>
	<guid isPermaLink='true'>https://bioinformaticsonline.com/bookmarks/view/31564/htslib</guid>
	<pubDate>Wed, 15 Mar 2017 11:38:05 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/31564/htslib</link>
	<title><![CDATA[HTSlib]]></title>
	<description><![CDATA[...and calling/filtering/summarising SNP and short indel sequence variants<strong class="search-highlight search-highlight-color1">HTSlib</strong>A C library for reading/writing high-throughput sequencing data
Samtools and BCFtools both use <strong class="search-highlight search-highlight-color1">HTSlib</strong> internally, but these source...]]></description>
</item>

<item>
	<guid isPermaLink='true'>https://bioinformaticsonline.com/bookmarks/view/33482/tardis-toolkit-for-automated-and-rapid-discovery-of-structural-variants</guid>
	<pubDate>Fri, 09 Jun 2017 04:43:31 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/33482/tardis-toolkit-for-automated-and-rapid-discovery-of-structural-variants</link>
	<title><![CDATA[TARDIS: Toolkit for automated and rapid discovery of structural variants]]></title>
	<description><![CDATA[...apid DIscovery of Structural variants
Requirements
zlib (http://www.zlib.net)mrfast (https://github.com/BilkentCompGen/mrfast)<strong class="search-highlight search-highlight-color1">htslib</strong> (included as submodule; http://<strong class="search-highlight search-highlight-color1">htslib</strong>.org/)Fetching tardis
git clo...]]></description>
</item>

<item>
	<guid isPermaLink='true'>https://bioinformaticsonline.com/pages/view/33840/awesome-perl-frameworks-libraries-and-software-part-3</guid>
	<pubDate>Fri, 07 Jul 2017 04:10:32 -0500</pubDate>
	<link>https://bioinformaticsonline.com/pages/view/33840/awesome-perl-frameworks-libraries-and-software-part-3</link>
	<title><![CDATA[Awesome perl frameworks, libraries and software - PART 3]]></title>
	<description><![CDATA[...gle provides OO access to Google REST API from Perl
Ensembl/Bio-DB-HTS&nbsp;- Git repo for Bio::DB::HTS module on CPAN, providing Perl links into <strong class="search-highlight search-highlight-color1">HTSlib</strong>
eblah/E-Blah-Forum&nbsp;- E-...]]></description>
</item>

<item>
	<guid isPermaLink='true'>https://bioinformaticsonline.com/pages/view/26617/list-of-bioinformatics-software-tools-for-next-generation-sequencing</guid>
	<pubDate>Fri, 11 Mar 2016 20:22:14 -0600</pubDate>
	<link>https://bioinformaticsonline.com/pages/view/26617/list-of-bioinformatics-software-tools-for-next-generation-sequencing</link>
	<title><![CDATA[List of Bioinformatics Software Tools for Next Generation Sequencing]]></title>
	<description><![CDATA[...es visualization


DeNovoGear

Description: de-novo variant calling and interpretation; standalone program; dependencies C++ compiler, CMake, <strong class="search-highlight search-highlight-color1">HTSlib</strong>, Eigen, Boost
Input: PED and...]]></description>
</item>

<item>
	<guid isPermaLink='true'>https://bioinformaticsonline.com/pages/view/35429/list-of-visualization-tools-for-genome-alignments</guid>
	<pubDate>Fri, 02 Feb 2018 13:25:33 -0600</pubDate>
	<link>https://bioinformaticsonline.com/pages/view/35429/list-of-visualization-tools-for-genome-alignments</link>
	<title><![CDATA[List of visualization tools for genome alignments]]></title>
	<description><![CDATA[...tudies
http://sing.ei.uvigo.es/pileline/pilelinegui.html
SAMtools tview&nbsp;
Simple and fast text alignment viewer; NGS compatible
http://www.<strong class="search-highlight search-highlight-color1">htslib</strong>.org/
SEWAL
Uses a locality-...]]></description>
</item>

<item>
	<guid isPermaLink='false'>14227</guid>
	<pubDate>Thu, 21 Aug 2014 03:07:49 -0500</pubDate>
	<link>https://bioinformaticsonline.com/thewire/view/14227</link>
	<title><![CDATA[Wire post by Rahul Agarwal]]></title>
	<description><![CDATA[WGS/WES Mapping to Variant Calls - Version 1.0! http://www.<strong class="search-highlight search-highlight-color1">htslib</strong>.org/workflow/ #Omics #NGS #WGS #SNP]]></description>
</item>

<item>
	<guid isPermaLink='false'>38000</guid>
	<pubDate>Thu, 25 Oct 2018 08:33:59 -0500</pubDate>
	<link>https://bioinformaticsonline.com/thewire/view/38000</link>
	<title><![CDATA[Wire post by Rahul Nayak]]></title>
	<description><![CDATA[Variant calling workflow http://www.<strong class="search-highlight search-highlight-color1">htslib</strong>.org/workflow/ #Variant #Calling #Tutorial]]></description>
</item>

<item>
	<guid isPermaLink='true'>https://bioinformaticsonline.com/snippets/view/37907/installing-pb-assembly-on-linux</guid>
	<pubDate>Tue, 09 Oct 2018 10:24:43 -0500</pubDate>
	<link>https://bioinformaticsonline.com/snippets/view/37907/installing-pb-assembly-on-linux</link>
	<title><![CDATA[Installing pb-assembly on Linux !]]></title>
	<description><![CDATA[....0.2-gompi-2016b-OpenBLAS-0.2.18-LAPACK-3.6.1
<strong class="search-highlight search-highlight-color1">HTSlib</strong>/1.3.1-foss-2016a...1.10.2-hc401514_2          conda-forge
    <strong class="search-highlight search-highlight-color1">htslib</strong>:                  1.7-0....10.2               hc401514_2    conda-forge
<strong class="search-highlight search-highlight-color1">htslib</strong>                    1.7...]]></description>
</item>

<item>
	<guid isPermaLink='true'>https://bioinformaticsonline.com/snippets/view/37997/install-htslib-on-ubuntu</guid>
	<pubDate>Thu, 25 Oct 2018 06:39:36 -0500</pubDate>
	<link>https://bioinformaticsonline.com/snippets/view/37997/install-htslib-on-ubuntu</link>
	<title><![CDATA[Install HTSLIB on Ubuntu !]]></title>
	<description><![CDATA[...t https://github.com/samtools/<strong class="search-highlight search-highlight-color1">htslib</strong>/releases/download/1.9/<strong class="search-highlight search-highlight-color1">htslib</strong>-1.9.tar.bz2
--2018-10-25 13:...on=attachment%3B%20filename%3D<strong class="search-highlight search-highlight-color1">htslib</strong>-1.9.tar.bz2&response-content-...tslib-1.9/cram/cram_encode.c
<strong class="search-highlight search-highlight-color1">htslib</strong>-1.9/cram/cram_encode.h
htsli...ib-1.9/test/bgziptest.txt.gz
<strong class="search-highlight search-highlight-color1">htslib</strong>-1.9/test/bgziptest.txt.gz.gzi...]]></description>
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<item>
	<guid isPermaLink='true'>https://bioinformaticsonline.com/bookmarks/view/31564/htslib</guid>
	<pubDate>Wed, 15 Mar 2017 11:38:05 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/31564/htslib</link>
	<title><![CDATA[HTSlib]]></title>
	<description><![CDATA[Samtools is a suite of programs for interacting with high-throughput sequencing data. It consists of three separate repositories:
SamtoolsReading/writing/editing/indexing/viewing SAM/BAM/CRAM formatBCFtoolsReading/writing BCF2/VCF/gVCF files and calling/filtering/summarising SNP and short indel ...]]></description>
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