https://bioinformaticsonline.com/search?q=Oneliner&search_type=all https://bioinformaticsonline.com/bookmarks/view/28303/fancy-oneliner-for-bioinformatics Thu, 07 Jul 2016 12:05:50 -0500 https://bioinformaticsonline.com/bookmarks/view/28303/fancy-oneliner-for-bioinformatics https://bioinformaticsonline.com/pages/view/36197/bioinformatics-oneliner Tue, 10 Apr 2018 04:13:03 -0500 https://bioinformaticsonline.com/pages/view/36197/bioinformatics-oneliner 11554 Fri, 06 Jun 2014 02:55:27 -0500 https://bioinformaticsonline.com/thewire/view/11554 Oneliner]]> 10779 Mon, 12 May 2014 04:47:30 -0500 https://bioinformaticsonline.com/thewire/view/10779 Oneliner]]> https://bioinformaticsonline.com/snippets/view/41164/bash-oneliner-to-extract-all-ids-from-a-multifasta-file Tue, 18 Feb 2020 08:06:09 -0600 https://bioinformaticsonline.com/snippets/view/41164/bash-oneliner-to-extract-all-ids-from-a-multifasta-file "$1]=1}/^>/{f=!l[$1]}f' seq.fa # You can play with this f=!l[$1 ] if wanted to extract or not extract the ids]]> https://bioinformaticsonline.com/snippets/view/41967/reformat-the-multifasta-for-sequence-length Mon, 13 Jul 2020 08:43:44 -0500 https://bioinformaticsonline.com/snippets/view/41967/reformat-the-multifasta-for-sequence-length oneliner to reformat the multifasta sequences awk '!/^>/ {printf "%s", $0; n = "\n"} /^>/ {print n $0; n = ""}' file.fasta | fold -w 100]]> https://bioinformaticsonline.com/thewire/view/11525 Thu, 05 Jun 2014 14:34:39 -0500 https://bioinformaticsonline.com/thewire/view/11525 https://bioinformaticsonline.com/thewire/view/11554 Fri, 06 Jun 2014 02:55:27 -0500 https://bioinformaticsonline.com/thewire/view/11554 https://bioinformaticsonline.com/fun/view/9207/biogeek-fun#annotation-2849 Fri, 23 Dec 2016 09:06:41 -0600 https://bioinformaticsonline.com/fun/view/9207/biogeek-fun#annotation-2849 oneliner ;) perl -ne 'chomp;if( />(.*)/){$head = $1; $i=0; next};@a=split("",$_); foreach(@a){$i++;if($_ eq "N" && $s ==0 ){print "$head\t$i"; $s =1}elsif($s==1 && $_ ne "N"){print "\t$i\n";$s=0}}' infile.fa]]> https://bioinformaticsonline.com/pages/view/11181/perl-one-liner-for-bioinformatician#annotation-1440 Fri, 30 May 2014 05:54:35 -0500 https://bioinformaticsonline.com/pages/view/11181/perl-one-liner-for-bioinformatician#annotation-1440 oneliner. Thank you for the useful list. You can also track other perl onliner posted on wire at http://bioinformaticsonline.com/thewire/tag/Oneliner]]>