Results for "Resequencing"
Users
About me: .... Experienced in using next-generation sequencing technologies like shotgun sequencing, linked reads, and long-read sequencing for whole-genome resequencing, variant calling, and transcr...1285 days ago
Bookmarks
- Plant scientists can exploit available 50 plant complete genomic data for their resequencing or other related projects for understanding the genetic mechanism behind their different trai...
3994 days ago
Orione – a web-based framework for NGS analysis in microbiology
End-to-end NGS microbiology data analysis requires a diversity of tools covering bacterial resequencing, de novo assembly, scaffolding, bacterial RNA-Seq, gene annotation and metagenomic...3719 days ago
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Bioinformatics approach to Boar Taint
...functional variant(s) underlying boar taint compounds can be used as genetic markers in selection of male pigs with reduced boar taint levels. Resequencing of a total of 47 samples belo...3934 days ago
Evaluation of genome assembly software based on long reads
...uctions of many dozens of plant and animal genomes, enabling new insights into evolution and sequence diversity. They have also been applied to resequencing analyses, to create detailed...2065 days ago
Top-level pages
Useful Publications and Websites for Deep Sequencing Data Analysis
...molecular breeding of Eucalyptus. Sansaloni et al., BMC Proceedings 5(Suppl 7):P54, 2011 Full Text High-throughput genotyping by whole-genome resequencing. Huang et al., Genome Res 19(...3924 days ago
List of bioinformatics open source projects/software.
...ics tools Visomics bioinformatics tools for omics data Genome Analysis Toolkit 1.0 (GATK 1.0) a software package to analyse next-generation resequencing data3902 days ago
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Wire posts
News
Accelerating Biology 2014:The Next Wave (18-22 February, 2014)
...ity of hundreds of genomes in a short time is expected to revolutionize area of life sciences. A number of new methods like de-novo sequencing, resequencing, transcriptomics etc. are eme...3990 days ago
- ...dels. One thousand indels from this individual's exome, called by one or more of the informatics pipelines, were selected for focused resequencing. This resequencing revealed a 77% true positive...
3691 days ago
Opportunity posts
RA at IISER Kolkata Computational Biology/Bioinformatics
...tional biology/bioinformatics/genomics or related field for next-generation sequencing (NGS) data analysis for small-RNAs, RNA-Seq and targeted resequencing of plants and associated orga...3719 days ago
Postdoc in comparative genomics
...toral position collaborating in an exciting project on comparative genomics of marine fish and shellfish species. In the project, we use genome resequencing data from a range of species...1389 days ago
Tags
MimicrEE2: Genome-wide forward simulations of Evolve and Resequencing studies
MimicrEE2, a multi-threaded Java program for genome-wide forward simulations of evolving populations. MimicrEE2 enables the convenient usage of available genomic resources, supports biological particulars of model organism frequently used in E&R studies and offers a wide range of different ad...Tags: MimicrEE2, Genome-wide, forward, simulations, Evolve, Resequencing, studies, evolution
2191 days ago
Comments
Comment on "Next Generation Sequencing (NGS) Tutorials"
ANGUS is a site built around the 2010 course on Analyzing Next-Generation Sequencing Data. It contains a number of detailed tutorials on mapping, assembly, mRNAseq, ChIP-seq, and resequencing analysis. Enjoy! http://ged.msu.edu/angus/index.html4051 days ago
Comment on "Bioinformatics approach to Boar Taint"
ISMB/ECCB 2011 Application of whole genome resequencing to detect sequence polymorphisms underlying boar tain...b2011/posterlistd227.html?cat=U PAG 2013Application of Whole Genome Resequencing to Detect SNPs for Selection...4063 days ago
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