https://bioinformaticsonline.com/snippets/view/36600/bash-script-to-convert-sam-to-bam-visualization-ready? https://bioinformaticsonline.com/snippets/view/36600/bash-script-to-convert-sam-to-bam-visualization-ready Mon, 14 May 2018 07:31:10 -0500 https://bioinformaticsonline.com/snippets/view/36600/bash-script-to-convert-sam-to-bam-visualization-ready samtools view -bS file.sam | samtools sort - file_sorted samtools index test_sorted.bam test_sorted.bai]]> Jit