https://bioinformaticsonline.com/snippets/view/37209/bash-script-to-run-busco2? https://bioinformaticsonline.com/snippets/view/37209/bash-script-to-run-busco2 Fri, 29 Jun 2018 05:34:08 -0500 https://bioinformaticsonline.com/snippets/view/37209/bash-script-to-run-busco2 #!/bin/bash #set the path export PATH=$PATH:/home/urbe/Tools/augustus-3.2.3/bin export PATH=$PATH:/home/urbe/Tools/augustus-3.2.3/scripts export AUGUSTUS_CONFIG_PATH=/home/urbe/Tools/augustus-3.2.3/config #run BUSCO python BUSCO.py -i /media/urbe/MyDDrive/longMIRA_canuCorrect_sspaceLong/GRAAL_Haploid/adineta_p_lvl6/genome_CORRECTED2.fasta -c 30 -l metazoa_odb9 -o GRAALHaploid_BUSCO -m genome -f #Plot BUSCO python BUSCO_plot.py -wd GRAALHaploid_BUSCO]]> Jit