https://bioinformaticsonline.com/snippets/view/38423/finding-kmers-from-fasta-sequence-file? https://bioinformaticsonline.com/snippets/view/38423/finding-kmers-from-fasta-sequence-file Tue, 11 Dec 2018 09:33:24 -0600 https://bioinformaticsonline.com/snippets/view/38423/finding-kmers-from-fasta-sequence-file Save it in sample.fa >test TAATGCCATGGGATGTT jellyfish count -m 3 -s 100000 sample.fa -o sample.jf jellyfish dump -c sample.jf It return TGT 1 GAT 1 GGG 1 GGA 1 CAT 1 TGC 1 TAA 1 GCC 1 CCA 1 GTT 1 TGG 1 ATG 3 AAT 1]]> Jit