https://bioinformaticsonline.com/snippets/view/39849/map-the-long-reads? https://bioinformaticsonline.com/snippets/view/39849/map-the-long-reads Thu, 15 Aug 2019 01:05:25 -0500 https://bioinformaticsonline.com/snippets/view/39849/map-the-long-reads Map them agaist reference avaga genome using following codes git clone https://github.com/lh3/bwa.git cd bwa; make bwa index ref.fa bwa mem -x pacbio ref.fa pacbio.fq > aln.sam bwa mem -x ont2d ref.fa ont-2D.fq > aln.sam]]> Jit