https://bioinformaticsonline.com/snippets/view/40756/install-samtools-bcftools-and-htslib-on-ubuntu? https://bioinformaticsonline.com/snippets/view/40756/install-samtools-bcftools-and-htslib-on-ubuntu Wed, 29 Jan 2020 06:47:15 -0600 https://bioinformaticsonline.com/snippets/view/40756/install-samtools-bcftools-and-htslib-on-ubuntu #Inspired from online search sudo apt-get update sudo apt-get install gcc sudo apt-get install make sudo apt-get install libbz2-dev sudo apt-get install zlib1g-dev sudo apt-get install libncurses5-dev sudo apt-get install libncursesw5-dev sudo apt-get install liblzma-dev cd /usr/bin wget https://github.com/samtools/htslib/releases/download/1.9/htslib-1.9.tar.bz2 tar -vxjf htslib-1.9.tar.bz2 cd htslib-1.9 make cd .. wget https://github.com/samtools/samtools/releases/download/1.9/samtools-1.9.tar.bz2 tar -vxjf samtools-1.9.tar.bz2 cd samtools-1.9 make cd .. wget https://github.com/samtools/bcftools/releases/download/1.9/bcftools-1.9.tar.bz2 tar -vxjf bcftools-1.9.tar.bz2 cd bcftools-1.9 make export PATH="$PATH:/usr/bin/bcftools-1.9" export PATH="$PATH:/usr/bin/samtools-1.9" export PATH="$PATH:/usr/bin/htslib-1.9" source ~/.profile echo "All done"]]> Neel