https://bioinformaticsonline.com/snippets/view/40803/bash-command-to-install-miniconda? https://bioinformaticsonline.com/snippets/view/40803/bash-command-to-install-miniconda Sat, 01 Feb 2020 01:46:31 -0600 https://bioinformaticsonline.com/snippets/view/40803/bash-command-to-install-miniconda (base) [wsu29@bladeamd-2 tmp]$ wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh --2020-02-01 13:25:25-- https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh Resolving repo.anaconda.com... 104.16.130.3, 104.16.131.3, 2606:4700::6810:8303, ... Connecting to repo.anaconda.com|104.16.130.3|:443... connected. HTTP request sent, awaiting response... 200 OK Length: 71785000 (68M) [application/x-sh] Saving to: `Miniconda3-latest-Linux-x86_64.sh' 100%[=============================================================>] 7,17,85,000 2.07M/s in 33s 2020-02-01 13:25:59 (2.06 MB/s) - `Miniconda3-latest-Linux-x86_64.sh' saved [71785000/71785000] (base) [wsu29@bladeamd-2 tmp]$ sh Miniconda3-latest-Linux-x86_64.sh Welcome to Miniconda3 4.7.12 In order to continue the installation process, please review the license agreement. Please, press ENTER to continue >>> ... ... ... Please answer 'yes' or 'no':' >>> yes Miniconda3 will now be installed into this location: /data/sata_data/workshop/wsu29/miniconda3 - Press ENTER to confirm the location - Press CTRL-C to abort the installation - Or specify a different location below [/data/sata_data/workshop/wsu29/miniconda3] >>> Miniconda3 will now be installed into this location: /data/sata_data/workshop/wsu29/miniconda3 - Press ENTER to confirm the location - Press CTRL-C to abort the installation - Or specify a different location below [/data/sata_data/workshop/wsu29/miniconda3] >>> PREFIX=/data/sata_data/workshop/wsu29/miniconda3 Unpacking payload ... Collecting package metadata (current_repodata.json): done Solving environment: done ## Package Plan ## environment location: /data/sata_data/workshop/wsu29/miniconda3 added / updated specs: - _libgcc_mutex==0.1=main - asn1crypto==1.2.0=py37_0 - ca-certificates==2019.10.16=0 - certifi==2019.9.11=py37_0 - cffi==1.13.0=py37h2e261b9_0 - chardet==3.0.4=py37_1003 - conda-package-handling==1.6.0=py37h7b6447c_0 - conda==4.7.12=py37_0 - cryptography==2.8=py37h1ba5d50_0 - idna==2.8=py37_0 - libedit==3.1.20181209=hc058e9b_0 - libffi==3.2.1=hd88cf55_4 - libgcc-ng==9.1.0=hdf63c60_0 - libstdcxx-ng==9.1.0=hdf63c60_0 - ncurses==6.1=he6710b0_1 - openssl==1.1.1d=h7b6447c_3 - pip==19.3.1=py37_0 - pycosat==0.6.3=py37h14c3975_0 - pycparser==2.19=py37_0 - pyopenssl==19.0.0=py37_0 - pysocks==1.7.1=py37_0 - python==3.7.4=h265db76_1 - readline==7.0=h7b6447c_5 - requests==2.22.0=py37_0 - ruamel_yaml==0.15.46=py37h14c3975_0 - setuptools==41.4.0=py37_0 - six==1.12.0=py37_0 - sqlite==3.30.0=h7b6447c_0 - tk==8.6.8=hbc83047_0 - tqdm==4.36.1=py_0 - urllib3==1.24.2=py37_0 - wheel==0.33.6=py37_0 - xz==5.2.4=h14c3975_4 - yaml==0.1.7=had09818_2 - zlib==1.2.11=h7b6447c_3 The following NEW packages will be INSTALLED: _libgcc_mutex pkgs/main/linux-64::_libgcc_mutex-0.1-main asn1crypto pkgs/main/linux-64::asn1crypto-1.2.0-py37_0 ca-certificates pkgs/main/linux-64::ca-certificates-2019.10.16-0 certifi pkgs/main/linux-64::certifi-2019.9.11-py37_0 cffi pkgs/main/linux-64::cffi-1.13.0-py37h2e261b9_0 chardet pkgs/main/linux-64::chardet-3.0.4-py37_1003 conda pkgs/main/linux-64::conda-4.7.12-py37_0 conda-package-han~ pkgs/main/linux-64::conda-package-handling-1.6.0-py37h7b6447c_0 cryptography pkgs/main/linux-64::cryptography-2.8-py37h1ba5d50_0 idna pkgs/main/linux-64::idna-2.8-py37_0 libedit pkgs/main/linux-64::libedit-3.1.20181209-hc058e9b_0 libffi pkgs/main/linux-64::libffi-3.2.1-hd88cf55_4 libgcc-ng pkgs/main/linux-64::libgcc-ng-9.1.0-hdf63c60_0 libstdcxx-ng pkgs/main/linux-64::libstdcxx-ng-9.1.0-hdf63c60_0 ncurses pkgs/main/linux-64::ncurses-6.1-he6710b0_1 openssl pkgs/main/linux-64::openssl-1.1.1d-h7b6447c_3 pip pkgs/main/linux-64::pip-19.3.1-py37_0 pycosat pkgs/main/linux-64::pycosat-0.6.3-py37h14c3975_0 pycparser pkgs/main/linux-64::pycparser-2.19-py37_0 pyopenssl pkgs/main/linux-64::pyopenssl-19.0.0-py37_0 pysocks pkgs/main/linux-64::pysocks-1.7.1-py37_0 python pkgs/main/linux-64::python-3.7.4-h265db76_1 readline pkgs/main/linux-64::readline-7.0-h7b6447c_5 requests pkgs/main/linux-64::requests-2.22.0-py37_0 ruamel_yaml pkgs/main/linux-64::ruamel_yaml-0.15.46-py37h14c3975_0 setuptools pkgs/main/linux-64::setuptools-41.4.0-py37_0 six pkgs/main/linux-64::six-1.12.0-py37_0 sqlite pkgs/main/linux-64::sqlite-3.30.0-h7b6447c_0 tk pkgs/main/linux-64::tk-8.6.8-hbc83047_0 tqdm pkgs/main/noarch::tqdm-4.36.1-py_0 urllib3 pkgs/main/linux-64::urllib3-1.24.2-py37_0 wheel pkgs/main/linux-64::wheel-0.33.6-py37_0 xz pkgs/main/linux-64::xz-5.2.4-h14c3975_4 yaml pkgs/main/linux-64::yaml-0.1.7-had09818_2 zlib pkgs/main/linux-64::zlib-1.2.11-h7b6447c_3 Preparing transaction: done Executing transaction: done installation finished. Do you wish the installer to initialize Miniconda3 by running conda init? [yes|no] [no] >>> yes no change /data/sata_data/workshop/wsu29/miniconda3/condabin/conda no change /data/sata_data/workshop/wsu29/miniconda3/bin/conda no change /data/sata_data/workshop/wsu29/miniconda3/bin/conda-env no change /data/sata_data/workshop/wsu29/miniconda3/bin/activate no change /data/sata_data/workshop/wsu29/miniconda3/bin/deactivate no change /data/sata_data/workshop/wsu29/miniconda3/etc/profile.d/conda.sh no change /data/sata_data/workshop/wsu29/miniconda3/etc/fish/conf.d/conda.fish no change /data/sata_data/workshop/wsu29/miniconda3/shell/condabin/Conda.psm1 no change /data/sata_data/workshop/wsu29/miniconda3/shell/condabin/conda-hook.ps1 no change /data/sata_data/workshop/wsu29/miniconda3/lib/python3.7/site-packages/xontrib/conda.xsh no change /data/sata_data/workshop/wsu29/miniconda3/etc/profile.d/conda.csh modified /data/sata_data/workshop/wsu29/.bashrc ==> For changes to take effect, close and re-open your current shell. <== If you'd prefer that conda's base environment not be activated on startup, set the auto_activate_base parameter to false: conda config --set auto_activate_base false Thank you for installing Miniconda3!]]> Rahul Nayak