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	<title><![CDATA[BOL: R script to plot VCF file]]></title>
	<link>https://bioinformaticsonline.com/snippets/view/41324/r-script-to-plot-vcf-file?</link>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/snippets/view/41324/r-script-to-plot-vcf-file</guid>
	<pubDate>Mon, 02 Mar 2020 01:00:51 -0600</pubDate>
	<link>https://bioinformaticsonline.com/snippets/view/41324/r-script-to-plot-vcf-file</link>
	<title><![CDATA[R script to plot VCF file]]></title>
	<description><![CDATA[<code>library(vcfR)

vcf_file &lt;- system.file(&quot;file.vcf$&quot;, package = pkg)

vcf &lt;- read.vcfR( vcf_file, verbose = FALSE )

chrom &lt;- create.chromR(name=&#039;Supercontig&#039;, vcf=vcf)

plot(chrom)

#MORE at https://cran.r-project.org/web/packages/vcfR/vignettes/intro_to_vcfR.html</code>]]></description>
	<dc:creator>Jit</dc:creator>
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