https://bioinformaticsonline.com/snippets/view/41601/install-kraken-on-linux? https://bioinformaticsonline.com/snippets/view/41601/install-kraken-on-linux Mon, 04 May 2020 04:16:39 -0500 https://bioinformaticsonline.com/snippets/view/41601/install-kraken-on-linux $ conda install -c bioconda kraken Collecting package metadata (repodata.json): done Solving environment: done ## Package Plan ## environment location: /home/anaconda3 added / updated specs: - kraken The following packages will be downloaded: package | build ---------------------------|----------------- jellyfish-1.1.12 | h6bb024c_1 3.1 MB bioconda kraken-1.1 | h470a237_2 114 KB bioconda ------------------------------------------------------------ Total: 3.2 MB The following NEW packages will be INSTALLED: jellyfish bioconda/linux-64::jellyfish-1.1.12-h6bb024c_1 kraken bioconda/linux-64::kraken-1.1-h470a237_2 perl pkgs/main/linux-64::perl-5.26.2-h14c3975_0 Proceed ([y]/n)? y Downloading and Extracting Packages kraken-1.1 | 114 KB | ################################################## | 100% jellyfish-1.1.12 | 3.1 MB | ################################################## | 100% Preparing transaction: done Verifying transaction: done Executing transaction: done $conda install -c bioconda kraken-all Collecting package metadata (repodata.json): done Solving environment: done ## Package Plan ## environment location: /home/anaconda3 added / updated specs: - kraken-all The following packages will be downloaded: package | build ---------------------------|----------------- kraken-0.10.6_eaf8fb68 | 2 98 KB bioconda kraken-all-0.10.6_eaf8fb68 | 0 857 B bioconda perl-threaded-5.26.0 | 0 4 KB bioconda ------------------------------------------------------------ Total: 103 KB The following NEW packages will be INSTALLED: kraken-all bioconda/linux-64::kraken-all-0.10.6_eaf8fb68-0 perl-threaded bioconda/linux-64::perl-threaded-5.26.0-0 The following packages will be SUPERSEDED by a higher-priority channel: kraken bioconda/label/cf201901::kraken-1.1-h~ --> bioconda::kraken-0.10.6_eaf8fb68-2 Proceed ([y]/n)? y Downloading and Extracting Packages kraken-0.10.6_eaf8fb | 98 KB | ################################################## | 100% kraken-all-0.10.6_ea | 857 B | ################################################## | 100% perl-threaded-5.26.0 | 4 KB | ################################################## | 100% Preparing transaction: done Verifying transaction: done Executing transaction: done]]> Shruti Paniwala