https://bioinformaticsonline.com/snippets/view/42409/install-sibeliaz-in-your-linux-cluster? https://bioinformaticsonline.com/snippets/view/42409/install-sibeliaz-in-your-linux-cluster Sun, 20 Dec 2020 00:40:32 -0600 https://bioinformaticsonline.com/snippets/view/42409/install-sibeliaz-in-your-linux-cluster (jitenv) jitendra@Bathymodiolus:~$ conda install -c bioconda sibeliaz Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen solve. Retrying with flexible solve. Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source. Collecting package metadata (repodata.json): done Solving environment: done ## Package Plan ## environment location: /home/jitendra/.conda/envs/jitenv added / updated specs: - sibeliaz The following packages will be downloaded: package | build ---------------------------|----------------- _anaconda_depends-2019.10 | py27_0 6 KB anaconda-custom | py27_1 3 KB ca-certificates-2020.12.8 | h06a4308_0 121 KB certifi-2020.6.20 | pyhd3eb1b0_3 155 KB maf2synteny-1.0 | he1b5a44_0 61 KB bioconda openssl-1.1.1i | h27cfd23_0 2.5 MB sibeliaz-1.2.2 | he1b5a44_0 101 KB bioconda spoa-4.0.3 | he513fc3_0 103 KB bioconda tbb-2020.3 | hfd86e86_0 1.1 MB twopaco-0.9.4 | he1b5a44_0 374 KB bioconda ------------------------------------------------------------ Total: 4.5 MB The following NEW packages will be INSTALLED: _anaconda_depends pkgs/main/linux-64::_anaconda_depends-2019.10-py27_0 maf2synteny bioconda/linux-64::maf2synteny-1.0-he1b5a44_0 sibeliaz bioconda/linux-64::sibeliaz-1.2.2-he1b5a44_0 spoa bioconda/linux-64::spoa-4.0.3-he513fc3_0 twopaco bioconda/linux-64::twopaco-0.9.4-he1b5a44_0 The following packages will be UPDATED: ca-certificates 2019.8.28-0 --> 2020.12.8-h06a4308_0 certifi pkgs/main/linux-64::certifi-2019.9.11~ --> pkgs/main/noarch::certifi-2020.6.20-pyhd3eb1b0_3 openssl 1.1.1d-h7b6447c_2 --> 1.1.1i-h27cfd23_0 tbb 2019.4-hfd86e86_0 --> 2020.3-hfd86e86_0 The following packages will be DOWNGRADED: anaconda 2019.10-py27_0 --> custom-py27_1 Proceed ([y]/n)? y Downloading and Extracting Packages sibeliaz-1.2.2 | 101 KB | ######################################################################## | 100% maf2synteny-1.0 | 61 KB | ######################################################################## | 100% certifi-2020.6.20 | 155 KB | ######################################################################## | 100% spoa-4.0.3 | 103 KB | ######################################################################## | 100% ca-certificates-2020 | 121 KB | ######################################################################## | 100% openssl-1.1.1i | 2.5 MB | ######################################################################## | 100% anaconda-custom | 3 KB | ######################################################################## | 100% _anaconda_depends-20 | 6 KB | ######################################################################## | 100% twopaco-0.9.4 | 374 KB | ######################################################################## | 100% tbb-2020.3 | 1.1 MB | ######################################################################## | 100% Preparing transaction: done Verifying transaction: done Executing transaction: done (jitenv) jitendra@Bathymodiolus:~$ sibeliaz You must provide the input file name (jitenv) jitendra@Bathymodiolus:~$ sibeliaz -h Usage: [-k <odd integer>] [-b <integer>] [-m <integer>] [-a <integer>] [-t <integer>] [-f <integer>] [-o <output_directory>] [-n] <input file> (jitenv) jitendra@Bathymodiolus:~$]]> Jit