https://bioinformaticsonline.com/snippets/view/42551/install-kraken2-using-conda? https://bioinformaticsonline.com/snippets/view/42551/install-kraken2-using-conda Tue, 05 Jan 2021 21:56:04 -0600 https://bioinformaticsonline.com/snippets/view/42551/install-kraken2-using-conda (JitMetaENV) ➜ day2 conda install -c bioconda kraken2 Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen solve. Retrying with flexible solve. Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source. Collecting package metadata (repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists. <== current version: 4.9.0 latest version: 4.9.2 Please update conda by running $ conda update -n base -c defaults conda ## Package Plan ## environment location: /home/urbe/anaconda3/envs/JitMetaENV added / updated specs: - kraken2 The following packages will be downloaded: package | build ---------------------------|----------------- blast-2.10.1 | pl526he19e7b1_3 20.6 MB bioconda entrez-direct-13.9 | pl526h375a9b1_0 5.5 MB bioconda kraken2-2.1.1 | pl526hc9558a2_0 203 KB bioconda perl-archive-tar-2.32 | pl526_0 31 KB bioconda perl-base-2.23 | pl526_1 10 KB bioconda perl-common-sense-3.74 | pl526_2 11 KB bioconda perl-compress-raw-bzip2-2.087| pl526he1b5a44_0 44 KB bioconda perl-compress-raw-zlib-2.087| pl526hc9558a2_0 72 KB bioconda perl-digest-hmac-1.03 | pl526_3 9 KB bioconda perl-digest-md5-2.55 | pl526_0 18 KB bioconda perl-encode-locale-1.05 | pl526_6 11 KB bioconda perl-exporter-tiny-1.002001| pl526_0 23 KB bioconda perl-file-listing-6.04 | pl526_1 9 KB bioconda perl-html-parser-3.72 | pl526h6bb024c_5 66 KB bioconda perl-html-tagset-3.20 | pl526_3 12 KB bioconda perl-html-tree-5.07 | pl526_1 129 KB bioconda perl-http-cookies-6.04 | pl526_0 19 KB bioconda perl-http-daemon-6.01 | pl526_1 14 KB bioconda perl-http-date-6.02 | pl526_3 10 KB bioconda perl-http-message-6.18 | pl526_0 51 KB bioconda perl-http-negotiate-6.01 | pl526_3 13 KB bioconda perl-io-compress-2.087 | pl526he1b5a44_0 81 KB bioconda perl-io-html-1.001 | pl526_2 13 KB bioconda perl-io-socket-ssl-2.066 | pl526_0 151 KB bioconda perl-io-zlib-1.10 | pl526_2 9 KB bioconda perl-json-4.02 | pl526_0 52 KB bioconda perl-json-xs-2.34 | pl526h6bb024c_3 63 KB bioconda perl-libwww-perl-6.39 | pl526_0 94 KB bioconda perl-list-moreutils-0.428 | pl526_1 28 KB bioconda perl-list-moreutils-xs-0.428| pl526_0 43 KB bioconda perl-lwp-mediatypes-6.04 | pl526_0 22 KB bioconda perl-lwp-protocol-https-6.07| pl526_4 9 KB bioconda perl-mozilla-ca-20180117 | pl526_1 140 KB bioconda perl-net-http-6.19 | pl526_0 19 KB bioconda perl-net-ssleay-1.88 | pl526h90d6eec_0 289 KB bioconda perl-ntlm-1.09 | pl526_4 15 KB bioconda perl-pathtools-3.75 | pl526h14c3975_1 41 KB bioconda perl-scalar-list-utils-1.52| pl526h516909a_0 38 KB bioconda perl-socket-2.027 | pl526_1 31 KB bioconda perl-storable-3.15 | pl526h14c3975_0 63 KB bioconda perl-test-requiresinternet-0.05| pl526_0 7 KB bioconda perl-time-local-1.28 | pl526_1 10 KB bioconda perl-try-tiny-0.30 | pl526_1 17 KB bioconda perl-types-serialiser-1.0 | pl526_2 10 KB bioconda perl-www-robotrules-6.02 | pl526_3 12 KB bioconda perl-xml-parser-2.44 | pl526h4e0c4b3_7 165 KB bioconda perl-xml-sax-expat-0.51 | pl526_3 10 KB bioconda perl-xml-simple-2.25 | pl526_1 48 KB bioconda popt-1.16 | 1 171 KB bioconda rsync-3.1.3 | h1245774_1003 286 KB conda-forge tar-1.32 | hd4ba37b_0 891 KB conda-forge ------------------------------------------------------------ Total: 29.6 MB The following NEW packages will be INSTALLED: blast bioconda/linux-64::blast-2.10.1-pl526he19e7b1_3 entrez-direct bioconda/linux-64::entrez-direct-13.9-pl526h375a9b1_0 expat conda-forge/linux-64::expat-2.2.9-he1b5a44_2 kraken2 bioconda/linux-64::kraken2-2.1.1-pl526hc9558a2_0 pcre conda-forge/linux-64::pcre-8.44-he1b5a44_0 perl-archive-tar bioconda/linux-64::perl-archive-tar-2.32-pl526_0 perl-base bioconda/linux-64::perl-base-2.23-pl526_1 perl-common-sense bioconda/linux-64::perl-common-sense-3.74-pl526_2 perl-compress-raw~ bioconda/linux-64::perl-compress-raw-bzip2-2.087-pl526he1b5a44_0 perl-compress-raw~ bioconda/linux-64::perl-compress-raw-zlib-2.087-pl526hc9558a2_0 perl-digest-hmac bioconda/linux-64::perl-digest-hmac-1.03-pl526_3 perl-digest-md5 bioconda/linux-64::perl-digest-md5-2.55-pl526_0 perl-encode-locale bioconda/linux-64::perl-encode-locale-1.05-pl526_6 perl-exporter-tiny bioconda/linux-64::perl-exporter-tiny-1.002001-pl526_0 perl-file-listing bioconda/linux-64::perl-file-listing-6.04-pl526_1 perl-html-parser bioconda/linux-64::perl-html-parser-3.72-pl526h6bb024c_5 perl-html-tagset bioconda/linux-64::perl-html-tagset-3.20-pl526_3 perl-html-tree bioconda/linux-64::perl-html-tree-5.07-pl526_1 perl-http-cookies bioconda/linux-64::perl-http-cookies-6.04-pl526_0 perl-http-daemon bioconda/linux-64::perl-http-daemon-6.01-pl526_1 perl-http-date bioconda/linux-64::perl-http-date-6.02-pl526_3 perl-http-message bioconda/linux-64::perl-http-message-6.18-pl526_0 perl-http-negotia~ bioconda/linux-64::perl-http-negotiate-6.01-pl526_3 perl-io-compress bioconda/linux-64::perl-io-compress-2.087-pl526he1b5a44_0 perl-io-html bioconda/linux-64::perl-io-html-1.001-pl526_2 perl-io-socket-ssl bioconda/linux-64::perl-io-socket-ssl-2.066-pl526_0 perl-io-zlib bioconda/linux-64::perl-io-zlib-1.10-pl526_2 perl-json bioconda/linux-64::perl-json-4.02-pl526_0 perl-json-xs bioconda/linux-64::perl-json-xs-2.34-pl526h6bb024c_3 perl-libwww-perl bioconda/noarch::perl-libwww-perl-6.39-pl526_0 perl-list-moreuti~ bioconda/linux-64::perl-list-moreutils-0.428-pl526_1 perl-list-moreuti~ bioconda/linux-64::perl-list-moreutils-xs-0.428-pl526_0 perl-lwp-mediatyp~ bioconda/linux-64::perl-lwp-mediatypes-6.04-pl526_0 perl-lwp-protocol~ bioconda/linux-64::perl-lwp-protocol-https-6.07-pl526_4 perl-mozilla-ca bioconda/linux-64::perl-mozilla-ca-20180117-pl526_1 perl-net-http bioconda/noarch::perl-net-http-6.19-pl526_0 perl-net-ssleay bioconda/linux-64::perl-net-ssleay-1.88-pl526h90d6eec_0 perl-ntlm bioconda/linux-64::perl-ntlm-1.09-pl526_4 perl-pathtools bioconda/linux-64::perl-pathtools-3.75-pl526h14c3975_1 perl-scalar-list-~ bioconda/linux-64::perl-scalar-list-utils-1.52-pl526h516909a_0 perl-socket bioconda/linux-64::perl-socket-2.027-pl526_1 perl-storable bioconda/linux-64::perl-storable-3.15-pl526h14c3975_0 perl-test-require~ bioconda/linux-64::perl-test-requiresinternet-0.05-pl526_0 perl-time-local bioconda/linux-64::perl-time-local-1.28-pl526_1 perl-try-tiny bioconda/linux-64::perl-try-tiny-0.30-pl526_1 perl-types-serial~ bioconda/linux-64::perl-types-serialiser-1.0-pl526_2 perl-www-robotrul~ bioconda/linux-64::perl-www-robotrules-6.02-pl526_3 perl-xml-parser bioconda/linux-64::perl-xml-parser-2.44-pl526h4e0c4b3_7 perl-xml-sax-expat bioconda/linux-64::perl-xml-sax-expat-0.51-pl526_3 perl-xml-simple bioconda/linux-64::perl-xml-simple-2.25-pl526_1 popt bioconda/linux-64::popt-1.16-1 rsync conda-forge/linux-64::rsync-3.1.3-h1245774_1003 tar conda-forge/linux-64::tar-1.32-hd4ba37b_0 Proceed ([y]/n)?]]> Jit