https://bioinformaticsonline.com/snippets/view/42556/install-quast-using-conda? https://bioinformaticsonline.com/snippets/view/42556/install-quast-using-conda Wed, 06 Jan 2021 02:11:25 -0600 https://bioinformaticsonline.com/snippets/view/42556/install-quast-using-conda (JitMetaENV) ➜ ~ conda install -c bioconda quast Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists. <== current version: 4.9.0 latest version: 4.9.2 Please update conda by running $ conda update -n base -c defaults conda ## Package Plan ## environment location: /home/urbe/anaconda3/envs/JitMetaENV added / updated specs: - quast The following packages will be downloaded: package | build ---------------------------|----------------- circos-0.69.8 | 0 26.3 MB bioconda cycler-0.10.0 | py_2 9 KB conda-forge fontconfig-2.13.1 | h7e3eb15_1002 324 KB conda-forge giflib-5.2.1 | h36c2ea0_2 77 KB conda-forge glimmerhmm-3.0.4 | pl526hf484d3e_3 40.6 MB bioconda joblib-1.0.0 | pyhd8ed1ab_0 206 KB conda-forge jpeg-9d | h36c2ea0_0 264 KB conda-forge k8-0.2.5 | he513fc3_0 1.7 MB bioconda kiwisolver-1.3.1 | py36h51d7077_0 86 KB conda-forge lcms2-2.11 | hcbb858e_1 434 KB conda-forge libblas-3.9.0 | 6_openblas 11 KB conda-forge libcblas-3.9.0 | 6_openblas 11 KB conda-forge libgd-2.2.5 | h6e6070c_1008 297 KB conda-forge liblapack-3.9.0 | 6_openblas 11 KB conda-forge libopenblas-0.3.12 |pthreads_h4812303_1 8.9 MB conda-forge libtiff-4.2.0 | hdc55705_0 633 KB conda-forge libwebp-1.1.0 | h76fa15c_4 84 KB conda-forge libwebp-base-1.1.0 | h36c2ea0_3 864 KB conda-forge lz4-c-1.9.3 | h9c3ff4c_0 179 KB conda-forge matplotlib-base-3.3.3 | py36he12231b_0 6.8 MB conda-forge minimap2-2.17 | hed695b0_3 393 KB bioconda numpy-1.19.5 | py36h2aa4a07_0 5.3 MB conda-forge olefile-0.46 | pyh9f0ad1d_1 32 KB conda-forge perl-autoloader-5.74 | pl526_2 5 KB bioconda perl-clone-0.42 | pl526h516909a_0 13 KB bioconda perl-config-general-2.63 | pl526_0 41 KB bioconda perl-digest-perl-md5-1.9 | pl526_1 11 KB bioconda perl-dynaloader-1.25 | pl526_1 3 KB bioconda perl-font-ttf-1.06 | pl526_0 200 KB bioconda perl-gd-2.71 | pl526he860b03_0 114 KB bioconda perl-io-string-1.08 | pl526_3 10 KB bioconda perl-math-bezier-0.01 | pl526_1 8 KB bioconda perl-math-round-0.07 | pl526_1 9 KB bioconda perl-math-vecstat-0.08 | pl526_1 9 KB bioconda perl-module-implementation-0.09| pl526_2 9 KB bioconda perl-module-runtime-0.016 | pl526_1 15 KB bioconda perl-number-format-1.75 | pl526_3 20 KB bioconda perl-params-validate-1.29 | pl526h14c3975_1 25 KB bioconda perl-readonly-2.05 | pl526_0 17 KB bioconda perl-regexp-common-2017060201| pl526_0 93 KB bioconda perl-set-intspan-1.19 | pl526_1 22 KB bioconda perl-statistics-basic-1.6611| pl526_2 32 KB bioconda perl-svg-2.84 | pl526_0 37 KB bioconda perl-text-format-0.59 | pl526_2 16 KB bioconda perl-time-hires-1.9760 | pl526h14c3975_1 25 KB bioconda pillow-8.1.0 | py36h4f9996e_0 675 KB conda-forge pyparsing-2.4.7 | pyh9f0ad1d_0 60 KB conda-forge quast-5.0.2 |py36pl526h955c1b8_2 14.3 MB bioconda simplejson-3.8.1 | py36_0 130 KB bioconda tornado-6.1 | py36h1d69622_0 644 KB conda-forge zstd-1.4.8 | ha95c52a_1 702 KB conda-forge ------------------------------------------------------------ Total: 110.5 MB The following NEW packages will be INSTALLED: circos bioconda/noarch::circos-0.69.8-0 cycler conda-forge/noarch::cycler-0.10.0-py_2 giflib conda-forge/linux-64::giflib-5.2.1-h36c2ea0_2 glimmerhmm bioconda/linux-64::glimmerhmm-3.0.4-pl526hf484d3e_3 joblib conda-forge/noarch::joblib-1.0.0-pyhd8ed1ab_0 jpeg conda-forge/linux-64::jpeg-9d-h36c2ea0_0 k8 bioconda/linux-64::k8-0.2.5-he513fc3_0 kiwisolver conda-forge/linux-64::kiwisolver-1.3.1-py36h51d7077_0 lcms2 conda-forge/linux-64::lcms2-2.11-hcbb858e_1 libblas conda-forge/linux-64::libblas-3.9.0-6_openblas libcblas conda-forge/linux-64::libcblas-3.9.0-6_openblas libgd conda-forge/linux-64::libgd-2.2.5-h6e6070c_1008 liblapack conda-forge/linux-64::liblapack-3.9.0-6_openblas libopenblas conda-forge/linux-64::libopenblas-0.3.12-pthreads_h4812303_1 libtiff conda-forge/linux-64::libtiff-4.2.0-hdc55705_0 libwebp conda-forge/linux-64::libwebp-1.1.0-h76fa15c_4 libwebp-base conda-forge/linux-64::libwebp-base-1.1.0-h36c2ea0_3 lz4-c conda-forge/linux-64::lz4-c-1.9.3-h9c3ff4c_0 matplotlib-base conda-forge/linux-64::matplotlib-base-3.3.3-py36he12231b_0 minimap2 bioconda/linux-64::minimap2-2.17-hed695b0_3 numpy conda-forge/linux-64::numpy-1.19.5-py36h2aa4a07_0 olefile conda-forge/noarch::olefile-0.46-pyh9f0ad1d_1 perl-autoloader bioconda/linux-64::perl-autoloader-5.74-pl526_2 perl-clone bioconda/linux-64::perl-clone-0.42-pl526h516909a_0 perl-config-gener~ bioconda/linux-64::perl-config-general-2.63-pl526_0 perl-digest-perl-~ bioconda/linux-64::perl-digest-perl-md5-1.9-pl526_1 perl-dynaloader bioconda/linux-64::perl-dynaloader-1.25-pl526_1 perl-font-ttf bioconda/linux-64::perl-font-ttf-1.06-pl526_0 perl-gd bioconda/linux-64::perl-gd-2.71-pl526he860b03_0 perl-io-string bioconda/linux-64::perl-io-string-1.08-pl526_3 perl-math-bezier bioconda/linux-64::perl-math-bezier-0.01-pl526_1 perl-math-round bioconda/linux-64::perl-math-round-0.07-pl526_1 perl-math-vecstat bioconda/linux-64::perl-math-vecstat-0.08-pl526_1 perl-module-imple~ bioconda/linux-64::perl-module-implementation-0.09-pl526_2 perl-module-runti~ bioconda/linux-64::perl-module-runtime-0.016-pl526_1 perl-number-format bioconda/linux-64::perl-number-format-1.75-pl526_3 perl-params-valid~ bioconda/linux-64::perl-params-validate-1.29-pl526h14c3975_1 perl-readonly bioconda/linux-64::perl-readonly-2.05-pl526_0 perl-regexp-common bioconda/linux-64::perl-regexp-common-2017060201-pl526_0 perl-set-intspan bioconda/linux-64::perl-set-intspan-1.19-pl526_1 perl-statistics-b~ bioconda/linux-64::perl-statistics-basic-1.6611-pl526_2 perl-svg bioconda/linux-64::perl-svg-2.84-pl526_0 perl-text-format bioconda/linux-64::perl-text-format-0.59-pl526_2 perl-time-hires bioconda/linux-64::perl-time-hires-1.9760-pl526h14c3975_1 pillow conda-forge/linux-64::pillow-8.1.0-py36h4f9996e_0 pyparsing conda-forge/noarch::pyparsing-2.4.7-pyh9f0ad1d_0 python-dateutil conda-forge/noarch::python-dateutil-2.8.1-py_0 quast bioconda/linux-64::quast-5.0.2-py36pl526h955c1b8_2 simplejson bioconda/linux-64::simplejson-3.8.1-py36_0 six conda-forge/noarch::six-1.15.0-pyh9f0ad1d_0 tornado conda-forge/linux-64::tornado-6.1-py36h1d69622_0 zstd conda-forge/linux-64::zstd-1.4.8-ha95c52a_1 The following packages will be DOWNGRADED: fontconfig 2.13.1-h736d332_1003 --> 2.13.1-h7e3eb15_1002 icu 68.1-h58526e2_0 --> 67.1-he1b5a44_0 libxml2 2.9.10-h72842e0_3 --> 2.9.10-h68273f3_2 Proceed ([y]/n)?]]> Jit