https://bioinformaticsonline.com/snippets/view/42591/create-random-10000-snps-in-genome? https://bioinformaticsonline.com/snippets/view/42591/create-random-10000-snps-in-genome Sun, 10 Jan 2021 09:10:07 -0600 https://bioinformaticsonline.com/snippets/view/42591/create-random-10000-snps-in-genome (base) ➜ dupStudy git:(master) ✗ perl ../simuG.pl -refseq SGDref.R64-2-1.dups.fa -snp_count 10000 -prefix simuSNP [Sun Jan 10 16:05:57 2021] Starting simuG .. [Sun Jan 10 16:05:57 2021] Check specified options .. Running simuG for SNP/INDEL simulation >> Ignore all options for CNV/inversion/translocation simulation. This simulation use the random seed: 811014067 The option snp_count has been specified: snp_count = 10000 The option titv_ratio has been specified: titv_ratio = 0.5 [Sun Jan 10 16:05:57 2021] Introducing random SNPs based on the following parameters: > snp_count = 10000 > titv_ratio = 0.5 [Sun Jan 10 16:05:57 2021] Simulation completed! :) [Sun Jan 10 16:05:57 2021] Generating output files .. Generating the correspondance map for genomic variants introduced during simulation: simuSNP.refseq2simseq.map.txt Generating reference-based vcf file for genomic variants introduced during simulation: simuSNP.refseq2simseq.SNP.vcf [Sun Jan 10 16:05:57 2021] Done! :)]]> Jit