https://bioinformaticsonline.com/snippets/view/43052/download-genome-using-ncbi-esearch-command-line? https://bioinformaticsonline.com/snippets/view/43052/download-genome-using-ncbi-esearch-command-line Fri, 30 Apr 2021 00:31:09 -0500 https://bioinformaticsonline.com/snippets/view/43052/download-genome-using-ncbi-esearch-command-line #Download using command line "NC_005956.1" / "CP003784.1" esearch -db nucleotide -query "NC_005956.1" | efetch -format fasta > seq1.fa esearch -db nucleotide -query "CP003784.1" | efetch -format fasta > seq2.fa #fastANI for alignment free comparision #conda install -c bioconda fastani fastANI -q seq1.fa -r seq2.fa --visualize -o fastani.out #Plot using sequences Rscript plotSeq.R seq1.fa seq2.fa fastani.out.visual]]> Neel