https://bioinformaticsonline.com/snippets/view/43096/bash-script-to-check-installed-bioinformatics-program? https://bioinformaticsonline.com/snippets/view/43096/bash-script-to-check-installed-bioinformatics-program Thu, 24 Jun 2021 04:21:26 -0500 https://bioinformaticsonline.com/snippets/view/43096/bash-script-to-check-installed-bioinformatics-program allTools=(bwa mummer trimomatic) decFlag=0; for name in ${allTools[@]}; do #echo "enter your package name" # read name dpkg -s $name &> /dev/null if [ $? -ne 0 ] then echo " $name not installed :: Try installing $name with conda first" #sudo apt-get update #sudo apt-get install $name decFlag=1; else echo " $name installed" fi done if [[ $decFlag -ne 0 ]] then echo "Install all the missing sotware first" exit fi]]> Jit