https://bioinformaticsonline.com/snippets/view/43345/python-script-to-read-fasta-and-fastq-file? https://bioinformaticsonline.com/snippets/view/43345/python-script-to-read-fasta-and-fastq-file Thu, 02 Sep 2021 02:01:39 -0500 https://bioinformaticsonline.com/snippets/view/43345/python-script-to-read-fasta-and-fastq-file # !/usr/bin/env python3 # -*- coding: utf-8 -*- from pysam import FastxFile def read_fasta_q_file(fasta_q_file): """Parse FASTA/Q file using `pysam.FastxFile`. Args: fasta_q_file (str): Path to FASTA/Q file. """ with FastxFile(fasta_q_file) as fh: for entry in fh: sequence_id = entry.name sequence = entry.sequence]]> LEGE