https://bioinformaticsonline.com/snippets/view/43669/bowtie2-mapping? https://bioinformaticsonline.com/snippets/view/43669/bowtie2-mapping Mon, 20 Dec 2021 05:46:02 -0600 https://bioinformaticsonline.com/snippets/view/43669/bowtie2-mapping bowtie2-build toy_dataset_contig_for_mapping.fasta toy_dataset_contig_for_mapping.btindex bowtie2 -x toy_dataset_contig_for_mapping.btindex -f -U toy_dataset_reads_for_mapping.fasta -S toy_dataset_mapped_species1.sam samtools sort toy_dataset_mapped_species1.bam -o toy_dataset_mapped_species1_sorted.bam samtools index toy_dataset_mapped_species1_sorted.bam]]> Jit