https://bioinformaticsonline.com/snippets/view/43960/blast-short-sequences? https://bioinformaticsonline.com/snippets/view/43960/blast-short-sequences Wed, 21 Sep 2022 07:41:25 -0500 https://bioinformaticsonline.com/snippets/view/43960/blast-short-sequences (jitENV) [jnarayan@hn1 preetiDATA]$ blastn -task blastn -query list_flank_0.fa -subject ../monkeypoxDATA_07_06_22/JIT_gisaid_pox_2022_09_06_07.fasta -evalue 20000000 -word_size 5 -num_threads 4 -outfmt 6 -out blastn_0.txt -qcov_hsp_perc 100 -perc_identity 100 -max_target_seqs 10000]]> Jit