https://bioinformaticsonline.com/snippets/view/44738/python-script-for-treemap-using-pythons-plotly-library? https://bioinformaticsonline.com/snippets/view/44738/python-script-for-treemap-using-pythons-plotly-library Sat, 14 Dec 2024 12:45:15 -0600 https://bioinformaticsonline.com/snippets/view/44738/python-script-for-treemap-using-pythons-plotly-library import plotly.express as px import pandas as pd # Sample dataset: Representing biological pathways and their associated counts data = { "Category": ["Metabolism", "Metabolism", "Metabolism", "Cellular Processes", "Cellular Processes", "Cellular Processes", "Information Storage", "Information Storage"], "Subcategory": ["Carbohydrate metabolism", "Lipid metabolism", "Amino acid metabolism", "Signal transduction", "Cell cycle", "Transport", "DNA replication", "RNA processing"], "Count": [150, 120, 90, 100, 85, 70, 110, 95] } # Convert data to a DataFrame df = pd.DataFrame(data) # Create the treemap fig = px.treemap( df, path=["Category", "Subcategory"], # Hierarchical levels values="Count", # Size of the treemap blocks color="Count", # Color based on the count values color_continuous_scale="Viridis" # Color scale ) # Add a title fig.update_layout(title="Treemap: Hierarchical Data Representation in Bioinformatics") # Show the plot fig.show()]]> LEGE