BOL: All wire posts

Wire post by Rahul Nayak

Rahul Nayak — Mon, 28 Sep 2015 10:16:16 -0500

The BLAST parser http://kirill-kryukov.com/study/tools/blast-parser/ #BLAST #Parser #Genome #Match #Sequence #Similarity

Wire post by Jitendra Narayan

Jitendra Narayan — Mon, 28 Sep 2015 10:00:31 -0500

#SVIMS #Bioinformatics centre recruitment #Traineeships and #Studentships vacancies http://svimstpt.ap.nic.in/jobs.html

Wire post by Jitendra Narayan

Jitendra Narayan — Thu, 24 Sep 2015 07:20:05 -0500

Fitting a neural network in R; neuralnet package http://www.r-bloggers.com/fitting-a-neural-network-in-r-neuralnet-package/ #R #Neural #Network #Neuralnet

Wire post by Rahul Agarwal

Rahul Agarwal — Tue, 22 Sep 2015 19:19:40 -0500

http://theory.stanford.edu/~tim/videos.html #bioinformatic #lectures

Wire post by Rahul Nayak

Rahul Nayak — Sun, 20 Sep 2015 18:07:06 -0500

Commonwealth Scholarship 2016, http://mhrd.gov.in/sites/upload_files/mhrd/files/UK2016.pdf #MHRD, Scholarship, UK, Study, Research, Commonwealth

Wire post by Jitendra Narayan

Jitendra Narayan — Thu, 10 Sep 2015 20:28:32 -0500

3D genome data and tool http://bengal.missouri.edu/~chengji/nsf_career.html #Chromosome #HiC #Analysis #Construction #Visualization #Modeling #3D #Genome #Structures

Wire post by Rahul Nayak

Rahul Nayak — Thu, 10 Sep 2015 19:22:04 -0500

Ten Simple Rules for a Computational Biologist’s Laboratory Notebook. http://journals.plos.org/ploscollections/article?id=10.1371%2Fjournal.pcbi.1004385 #Notebook #Lab #Rules #Bioinformatics

Wire post by Shruti Paniwala

Shruti Paniwala — Thu, 10 Sep 2015 16:23:29 -0500

Bioinformatics studentship and traineeship at Gargi collage http://gargi.du.ac.in/uploads/ngrey/News/Gargi_Advt_BIF_2015.pdf #Studentship #Traineeship #Gargi #Delhi #Bioinformatics

Wire post by Rahul Agarwal

Rahul Agarwal — Thu, 10 Sep 2015 08:09:10 -0500

https://github.com/griffithlab/rnaseq_tutorial/wiki #RNASeq #cloud

Wire post by Rahul Nayak

Rahul Nayak — Wed, 09 Sep 2015 16:17:11 -0500

Count the number of sequences in fastaq file. grep -c '^@' sample1.fq #Fastaq #Count #Number #Grep #Dirty #Oneliner #NGS

Wire post by Rahul Nayak

Rahul Nayak — Wed, 09 Sep 2015 16:05:55 -0500

Remove the fasta description and just keep the identifier. perl -p -i -e 's/>(.+?) .+/>$1/g' sample1.fa #Perl #Oneliner #Trick #Tips #Fasta #Identifier #Remove

Wire post by Rahul Nayak

Rahul Nayak — Wed, 09 Sep 2015 16:01:53 -0500

Extract sequences by their ID from a fasta file. perl -ne 'if(/^>(\S+)/){$c=$i{$1}}$c?print:chomp;$i{$_}=1 if @ARGV' ids.txt sample1.fa #Extract #Sequences #IDs #Fasta #Perl #Trick #Oneliner

Wire post by Abhimanyu Singh

Abhimanyu Singh — Tue, 08 Sep 2015 11:39:50 -0500

#Studentship at Central Agricultural University College of #Fisheries #Central #Agricultural #University Lembucherra, #Trpura (West) http://cofcau.nic.in/Walkin%20Interview%20on%209%20sep%202015.pdf

Wire post by Rahul Nayak

Rahul Nayak — Mon, 07 Sep 2015 12:14:57 -0500

Search and replace the string 'this' with the string 'that' in the file filename. perl -p -i -e 's/this/that/g' filename #Perl #Trick #PerlOneLiner #Tipsoftheday #Replace #FindandReplace

Wire post by Rahul Nayak

Rahul Nayak — Mon, 07 Sep 2015 12:11:28 -0500

Display top 10 Mrmory resource intensive processes in order $ line=$(ps aux | head -n 1) && echo $line; ps aux | sort -nrk 5 | head #Display #Top10 #Memory #Processes #Linux #Trick