BOL: All wire posts

Wire post by Rahul Agarwal

Rahul Agarwal — Tue, 10 Jun 2014 18:05:46 -0500

Fine wine from sequencing!! http://www.abc.net.au/news/2014-06-10/wine-dna-mapped-to-improve-quality/5511830 #Seq #Wine

Wire post by Jit

Jit — Tue, 10 Jun 2014 05:34:41 -0500

Count the total number of lines in a file. my $total=@{[]}; #Perl #Count #Number #Total #File

Wire post by Rahul Agarwal

Rahul Agarwal — Mon, 09 Jun 2014 07:27:57 -0500

Patent-free Research!!http://www.nature.com/nm/journal/v20/n6/full/nm0614-564.html #OpenSource #Research

Wire post by Rahul Agarwal

Rahul Agarwal — Mon, 09 Jun 2014 07:20:25 -0500

Role of small microRNA in antidepression treatment!! http://www.nature.com/nm/journal/vaop/ncurrent/full/nm.3582.html#methods #miRNA #Microarray #qPCR #Human

Wire post by Rahul Agarwal

Rahul Agarwal — Sun, 08 Jun 2014 09:35:29 -0500

http://phinch.org/ #Visaulisation

Wire post by Jitendra Narayan

Jitendra Narayan — Fri, 06 Jun 2014 16:28:28 -0500

Assemble short reads http://ged.msu.edu/angus/tutorials/short-read-assembly.html #Tutorial #ABySS #Bacteria #Reads #Assembly #Genomics #NGS

Wire post by John Parker

John Parker — Fri, 06 Jun 2014 15:39:52 -0500

NGS analysis pipeline http://www.egr.msu.edu/changroup/Protocols/NGS%20analysis%20example%20of%20a%20pipeline.html #Pipeline #NGS #Genomics #Tutorial

Wire post by Rahul Agarwal

Rahul Agarwal — Fri, 06 Jun 2014 07:54:57 -0500

FDA Applies Genome Sequencing !! http://www.foodsafetynews.com/2014/06/fda-applies-genome-sequencing-in-outbreak-investigation/#.U5G5zvmSych #FoodOmics

Wire post by Rahul Agarwal

Rahul Agarwal — Fri, 06 Jun 2014 07:42:17 -0500

Small RNA Determines Sex !! http://www.biotechniques.com/news/Small-RNA-Determines-Sex/biotechniques-352151.html#.U5G2tPmSycg #RNaOmics #piRNA

Wire post by Rahul Agarwal

Rahul Agarwal — Fri, 06 Jun 2014 07:30:36 -0500

Sheep genome decoded!! http://www.sciencemag.org/content/344/6188/1168.abstract #Omics #Seq

Wire post by Rahul Agarwal

Rahul Agarwal — Fri, 06 Jun 2014 07:28:33 -0500

Genetic sequencing traced root of MERS!! http://time.com/2827822/it-looks-like-camels-actually-can-transmit-mers-to-humans/ #HealthOmics

Wire post by Rahul Agarwal

Rahul Agarwal — Fri, 06 Jun 2014 07:22:58 -0500

http://www.nbcnews.com/health/health-news/boys-mysterious-infection-cured-after-dna-sequencing-n122871 #HealthOmics

Wire post by Jit

Jit — Fri, 06 Jun 2014 02:55:27 -0500

Remove the blank space from a fasta file. perl -nlwe 'tr/ //d; print if length' fileName #Delete #Space #Fasta #Perl #Oneliner

Wire post by Jit

Jit — Fri, 06 Jun 2014 02:54:18 -0500

Remove N from a fasta file. Go to vi editor, type :%s/N\{25,\}//g and press enter. #Vim #vi #N #Replace #Fasta

Wire post by Jit

Jit — Fri, 06 Jun 2014 02:38:28 -0500

perl -nle 'if (/^>/) { $sl = 0; print; next } next if ($sl >= 200); $_ = substr($_, 0, 200-$sl) if ($sl + length($_) > 200); $sl += length($_); print;' file.fa >new.fa #Perl #Extract #Fasta