BOL: All wire posts

Wire post by Rahul Nayak

Rahul Nayak — Thu, 05 Jun 2014 14:34:39 -0500

rename all *.txt as *.bak: find . -name "*.txt" | sed "s/\.txt$//" | xargs -i echo mv {}.txt {}.bak | sh #Linux #Rename #Oneliner

Wire post by Jit

Jit — Thu, 05 Jun 2014 02:09:02 -0500

Force install a Perl module sudo PERL_MM_USE_DEFAULT=1 perl -MCPAN -e "CPAN::Shell->force(qw(install Nginx::Log::Entry))" #Perl #Install #Force #CPAN #Module

Wire post by Jitendra Narayan

Jitendra Narayan — Wed, 04 Jun 2014 14:15:45 -0500

Use multi-core with Perl programs http://perltricks.com/article/61/2014/1/21/Make-your-code-run-faster-with-Perl-s-secret-turbo-module #Perl #MCE #Speed #Module

Wire post by Jitendra Narayan

Jitendra Narayan — Tue, 03 Jun 2014 15:36:05 -0500

Love to ping nucleosome positioning using PING 2.0 http://bioinformatics.oxfordjournals.org/content/29/16/2049.abstract #Nucleosome #Position #Chromosome #R #Package #Bioconductor

Wire post by Rahul Agarwal

Rahul Agarwal — Tue, 03 Jun 2014 15:25:52 -0500

http://www.ebi.ac.uk/training/online/course/ebi-next-generation-sequencing-practical-course/gene-regulation/chip-seq-analysis #Chip-seq

Wire post by Rahul Nayak

Rahul Nayak — Tue, 03 Jun 2014 10:39:47 -0500

NGSplot program allows you to easily visualize your NGS samples at functional genomic regions. https://code.google.com/p/ngsplot/ #NGS #ngs #Plot #ngsplot #Visualize #R

Wire post by Jitendra Narayan

Jitendra Narayan — Mon, 02 Jun 2014 13:47:42 -0500

R getting strong for NGS analysis http://manuals.bioinformatics.ucr.edu/home/ht-seq #Packages #NGS #R #Bioconductor #Bowtie #Sequence #Analysis #SNP

Wire post by Jitendra Narayan

Jitendra Narayan — Mon, 02 Jun 2014 13:39:44 -0500

Creates 100 random DNA sequences with 20 residues. sapply(1:100, function(x) paste(sample(c("A","T","G","C"), 20, replace=T), collapse="")) #R #Random #Sequence #DNA #Script

Wire post by Rahul Agarwal

Rahul Agarwal — Mon, 02 Jun 2014 06:18:50 -0500

KITLG -blond hair gene!! http://news.sciencemag.org/biology/2014/06/genetics-blond-hair?rss=1 #genetics #SNP

Wire post by Rahul Agarwal

Rahul Agarwal — Mon, 02 Jun 2014 05:31:51 -0500

Roche acquires Genia Technologies!! http://www.roche.com/media/media_releases/med-cor-2014-06-02.htm #Seq #Omics

Wire post by santosh pal

santosh pal — Sun, 01 Jun 2014 09:04:23 -0500

Load the ShortRead and BiocParallel packages for NGS data analysis in R #bioconductor #R #qualitycheck

Wire post by John Parker

John Parker — Sat, 31 May 2014 17:30:12 -0500

Useful R resources @ http://www.stat.wisc.edu/network-skills/learnR #R #Stats #Learn #Tutorial #Material #Learn #Course

Wire post by John Parker

John Parker — Sat, 31 May 2014 17:19:17 -0500

Bacterial genome assembly tips using Valvet http://pathogenomics.bham.ac.uk/blog/2009/09/tips-for-de-novo-bacterial-genome-assembly/ #Assembly #NGS #Bacteria #Genome #Tricks #Tips #Velvet

Wire post by Aaryan Lokwani

Aaryan Lokwani — Sat, 31 May 2014 02:44:31 -0500

List of bioinformatics companies worldwide http://grouthbio.com/Genome_Software_Service.php #Companies #Worldwide #Bioinformatics #List #Name

Wire post by Agampreet Kaur

Agampreet Kaur — Sat, 31 May 2014 01:47:18 -0500

Learn from the best http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1003645 #Help #Tips #Suggestions #Bioinfo