BOL: All wire posts

Wire post by Rahul Nayak

Rahul Nayak — Sat, 02 Mar 2019 18:53:27 -0600

Bioinformatics jobs University of Kolkata at http://www.caluniv.ac.in/news/professor-14-2-19/notice.pdf #Jobs #Kolkata #Bioinformatics

Wire post by Rahul Nayak

Rahul Nayak — Sat, 02 Mar 2019 18:23:51 -0600

Script of scripts: A pragmatic workflow system for daily computational research https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1006843 #SoS #Script #Analysis #Tools #Pipeline

Wire post by Jit

Jit — Sun, 24 Feb 2019 17:45:06 -0600

Human genome reads http://www.bcgsc.ca/downloads/btl/ntedit/paper/human/ #human #genome #reads #data

Wire post by Rahul Nayak

Rahul Nayak — Thu, 21 Feb 2019 10:20:30 -0600

NGS Exercise.4 https://wiki.bits.vib.be/index.php/NGS_Exercise.4 #Exercise #Learn #Plot #Circos #Genome #NGS #Tutorial

Wire post by Rahul Nayak

Rahul Nayak — Thu, 21 Feb 2019 10:18:18 -0600

ALLHiC: identify allelic contigs https://github.com/tangerzhang/ALLHiC/wiki/ALLHiC:-identify-allelic-contigs #AllHic #Scaffolding #3C #ALLHiC

Wire post by Rahul Nayak

Rahul Nayak — Thu, 21 Feb 2019 10:17:22 -0600

De novo genome assembly https://astrobiomike.github.io/genomics/de_novo_assembly #Genome #Assembly #DeNovo #Genome

Wire post by Rahul Nayak

Rahul Nayak — Thu, 21 Feb 2019 10:16:23 -0600

Errors in sequence assembly and corrections (Bioinformatics) http://what-when-how.com/bioinformatics/errors-in-sequence-assembly-and-corrections-bioinformatics/ #Assembly #Error

Wire post by Rahul Nayak

Rahul Nayak — Thu, 21 Feb 2019 10:15:05 -0600

Long read assembly workshop https://www.melbournebioinformatics.org.au/tutorials/tutorials/pacbio/ #Long #Reads #Assembly #PacBio #Learn #Tutorial #Workshop

Wire post by Rahul Nayak

Rahul Nayak — Thu, 21 Feb 2019 10:13:52 -0600

https://bioinformaticsdotca.github.io/high-throughput_biology_2017 #NGS #Tutorial #Learn #Assembly

Wire post by Jit

Jit — Mon, 18 Feb 2019 04:19:39 -0600

polySNP: an analysis tool for quantitative sequencing https://www.nybg.org/files/scientists/dlittle/polySNP.html #SNP #polySNP #analysis #peak #Area

Wire post by Abhimanyu Singh

Abhimanyu Singh — Fri, 15 Feb 2019 09:34:13 -0600

Mutalyzer website https://www.mutalyzer.nl/ #Mutation #Analysis

Wire post by Jit

Jit — Mon, 11 Feb 2019 18:01:41 -0600

Extract fasta with pattern $ perl -n -e '$on=(/^>(A)/) if (/^>/); print $_ if ($on);' pilonCor_round1.fasta > A_set.fa
#Pattern #Extract #Fasta

Wire post by Rahul Nayak

Rahul Nayak — Mon, 11 Feb 2019 06:15:01 -0600

Fastq 2 fasta convert $ sed '/^@/!d;s//>/;N' sample1.fq > sample1.fa #fastq2fasta #fastqtwofasta

Wire post by Rahul Nayak

Rahul Nayak — Mon, 11 Feb 2019 06:11:41 -0600

One liner to remove the description information from a fasta file and just keep the identifier $ perl -p -i -e 's/>(.+?) .+/>$1/g' sample1.fa #clean #header #fasta

Wire post by Rahul Agarwal

Rahul Agarwal — Sun, 10 Feb 2019 12:24:58 -0600

http://ms-utils.org/ #MassSpectrometry #tools #packages #databases