BOL: All wire posts

Wire post by Rahul Nayak

Rahul Nayak — Thu, 10 Jan 2019 09:25:01 -0600

Merge overlapping bed file https://bedtools.readthedocs.io/en/latest/content/tools/merge.html #bed #merge #overlapping

Wire post by Rahul Nayak

Rahul Nayak — Thu, 10 Jan 2019 09:20:37 -0600

make a window of 60k of bed file. $ bedtools makewindows -g genome -w 60000 > 60K.windows.bed #bed #bin #window

Wire post by Jit

Jit — Tue, 08 Jan 2019 14:20:34 -0600

I recommend two technologies: long reads to get the genome right, short reads to get the bases right. #Genome #Assembly #Reads #LonfReads

Wire post by BioJoker

BioJoker — Tue, 08 Jan 2019 08:34:36 -0600

#CheckM provides a set of tools for #assessing the #quality of #genomes recovered from isolates, single cells, or #metagenomes. http://ecogenomics.github.io/CheckM/

Wire post by AnHo

AnHo — Tue, 08 Jan 2019 05:04:27 -0600

Available bioconda packages https://bioconda.github.io/recipes.html #conda #bioconda

Wire post by Rahul Nayak

Rahul Nayak — Mon, 07 Jan 2019 08:45:39 -0600

Long reads assembly tutorial https://www.melbournebioinformatics.org.au/tutorials/tutorials/pacbio/ #Long #Reads #PacBio #assembly #Genome

Wire post by Jit

Jit — Mon, 07 Jan 2019 07:41:12 -0600

AB1 chromatograms used to validate the #ConTAMPR method for detecting DNA contamination https://data.mendeley.com/datasets/fsjpwrnv4t/1

Wire post by BioJoker

BioJoker — Mon, 07 Jan 2019 05:42:59 -0600

#swirl #teaches you #R programming and data science interactively, at your own pace, and right in the R console! https://swirlstats.com/ #learn

Wire post by Neel

Neel — Sat, 05 Jan 2019 08:57:18 -0600

Shiny tutorial http://shiny.rstudio.com/tutorial/ #R #Shiny

Wire post by Jitendra Narayan

Jitendra Narayan — Fri, 04 Jan 2019 23:14:35 -0600

BOL wish a very happy new year 2019 #BOLovers #BOL #Wish #2019

Wire post by Radha Agarkar

Radha Agarkar — Fri, 04 Jan 2019 09:04:31 -0600

Open source tools for videos making https://www.openshot.org/ #Open #Videos

Wire post by Jit

Jit — Wed, 02 Jan 2019 07:54:15 -0600

CANU assembler FAQ https://canu.readthedocs.io/en/latest/faq.html #canu #faq #haploid #phase

Wire post by Jit

Jit — Tue, 01 Jan 2019 12:57:29 -0600

#Block alignment: New representation and comparison #method to study #evolution of #genomes https://www.sciencedirect.com/science/article/pii/S0888754318304087

Wire post by Jit

Jit — Tue, 01 Jan 2019 12:47:21 -0600

Mesquite: A modular system for evolutionary analysis http://www.mesquiteproject.org/ #Evolution #Framework

Wire post by Jit

Jit — Tue, 01 Jan 2019 12:13:47 -0600

P-Values calculation https://www.mathbootcamps.com/what-is-a-p-value/ #P-Value #Pvalue