BOL: All wire posts

Wire post by BioStar

BioStar — Wed, 05 Sep 2018 10:46:03 -0500

Bioinformatics in Nigeria http://bioinformatics.ui.edu.ng/ #Nigeria #Bioinformatics

Wire post by BioStar

BioStar — Wed, 05 Sep 2018 10:42:03 -0500

Computational Biology and Bioinformatics in Nigeria https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3998874/ #Nigeria #Bioinformatics #Scope

Wire post by Rahul Nayak

Rahul Nayak — Wed, 05 Sep 2018 05:09:15 -0500

Multi-line fasta to single line fasta $ perl -pe '/^>/ ? print "\n" : chomp' in.fasta | tail -n +2 > out.fasta #Multiline #Singleline #Fasta

Wire post by Rahul Nayak

Rahul Nayak — Tue, 04 Sep 2018 09:18:39 -0500

Snakemake install Ubuntu $ sudo apt-get install snakemake #snakemake #Ubuntu #Install

Wire post by Jit

Jit — Tue, 28 Aug 2018 04:27:30 -0500

#Multiline Fasta To #SingleLine Fasta $ awk '/^>/ {printf("\n%s\n",$0);next; } { printf("%s",$0);} END {printf("\n");}' < file.fa

Wire post by Jit

Jit — Mon, 20 Aug 2018 14:19:12 -0500

Long Reads ( pacbio and nanopore) correction https://www.pacb.com/asset_tags/error-correction/ #PacBio #Error #Correction #LongReads

Wire post by Rahul Nayak

Rahul Nayak — Mon, 20 Aug 2018 05:35:08 -0500

https://scinapse.io/ #Non-profit #academic #search #engine

Wire post by Jit

Jit — Tue, 14 Aug 2018 05:20:18 -0500

cat /etc/*-release #System #version #Linux

Wire post by Jit

Jit — Thu, 09 Aug 2018 17:03:49 -0500

perl -pe '/^>/ ? print "\n" : chomp' LR.fasta | tail -n +2 > out.fasta #singleLine #Multifasta #Multi2Single

Wire post by Rahul Nayak

Rahul Nayak — Mon, 06 Aug 2018 10:14:26 -0500

Understanding PairedEnd(PE) mapping https://davetang.org/muse/2014/07/24/getting-started-paired-end-reads/ #PE #Paired #End #PairedEnd #Mapping #Map #Learn

Wire post by Rahul Nayak

Rahul Nayak — Mon, 06 Aug 2018 07:52:55 -0500

du -sh * | sort | grep "G" #List size of all the directory #Size #List #Directory #Linux

Wire post by Jit

Jit — Thu, 02 Aug 2018 07:58:14 -0500

#Remove #smartbell from #pacbio #removesmartbell.sh https://github.com/BioInfoTools/BBMap/blob/master/sh/removesmartbell.sh

Wire post by Jit

Jit — Tue, 31 Jul 2018 09:50:05 -0500

Scrubbing long reads https://dazzlerblog.wordpress.com/2017/04/22/1344/ #Scrub #Long #Reads #Pacbio

Wire post by Jit

Jit — Tue, 31 Jul 2018 07:58:00 -0500

Genome assembly https://www2.eecs.berkeley.edu/Pubs/TechRpts/2016/EECS-2016-43.pdf #Genome #Assembly #Tutorial

Wire post by Jit

Jit — Mon, 30 Jul 2018 10:54:22 -0500

#Canu #assembly of long reads https://canu.readthedocs.io/en/latest/quick-start.html