BOL: All wire posts

Wire post by Jit

Jit — Mon, 30 Jul 2018 09:23:46 -0500

Long read extraction https://github.com/rrwick/Unicycler/wiki/Read-extraction #Reads #Extractions #Long #PacBio #Ont

Wire post by Jit

Jit — Mon, 30 Jul 2018 07:35:16 -0500

Assembly Conversion https://ics.hutton.ac.uk/tablet/assembly-conversion/ #Assembly #Conversion #NGS

Wire post by Jit

Jit — Fri, 20 Jul 2018 13:40:24 -0500

Machine learning https://www.r-bloggers.com/explaining-black-box-machine-learning-models-code-part-1-tabular-data-caret-iml/amp/ #machinelearning #machine

Wire post by Neel

Neel — Fri, 20 Jul 2018 10:10:02 -0500

https://gatkforums.broadinstitute.org/gatk/discussion/1268/what-is-a-vcf-and-how-should-i-interpret-it #VCF #vcf #SNP

Wire post by Hardeep Kaur

Hardeep Kaur — Fri, 20 Jul 2018 04:09:56 -0500

sort -k2 -n genome.fa #Sort #Column2 #Bash

Wire post by Rahul Nayak

Rahul Nayak — Fri, 13 Jul 2018 19:53:52 -0500

Useful #tools for #genome analysis https://gigascience.biomedcentral.com/articles/10.1186/s13742-015-0077-2

Wire post by Jit

Jit — Fri, 13 Jul 2018 16:52:42 -0500

#Install #BioPython $ python2.7 -m pip install biopython $ python3.6 -m pip install biopython $ pypy -m pip install biopython

Wire post by Jit

Jit — Fri, 13 Jul 2018 08:56:18 -0500

http://qb.cshl.edu/assemblytics/ #Analysis #Genome #Mummer #Assembly #Assemblytics

Wire post by Jit

Jit — Mon, 09 Jul 2018 23:36:45 -0500

https://www.r-bloggers.com/a-comparative-review-of-the-r-commander-gui-for-r/amp/ #R #GUI

Wire post by Jit

Jit — Mon, 09 Jul 2018 04:51:51 -0500

Replace lowercase to N. perl -pe '/^[^>]/ and $_=~ s/[a-z]/N/g' genomic.fna > genomic.N-masked.fna #Mask #Lowecase2N #LowerCase

Wire post by Jit

Jit — Mon, 09 Jul 2018 04:50:34 -0500

Unmask lowercase. perl -pe '/^[^>]/ and $_=uc' genomic.fna > genomic.unmasked.fna #LowerCase #Unmask

Wire post by Jit

Jit — Sun, 08 Jul 2018 22:29:59 -0500

http://education.knoweng.org/sequenceng/ #learn #ngs

Wire post by Rahul Nayak

Rahul Nayak — Tue, 03 Jul 2018 05:01:20 -0500

Transcriptome assembly https://www.rna-seqblog.com/tag/transcriptome-assembly/ #RNA-seq #Transcriptome #Assembly

Wire post by Jit

Jit — Mon, 02 Jul 2018 10:48:14 -0500

Call for applications : Early Career #Fellowships in #Biomedical #Research https://www.indiaalliance.org/news/239

Wire post by Rahul Nayak

Rahul Nayak — Wed, 27 Jun 2018 18:50:42 -0500

Get unique ids from column 1 in Linux. $ cat output_file | cut -f 1 | sort | uniq > allUniqOUT #Unique #Linux #Cut