BOL: All wire posts

Wire post by Shruti Paniwala

Shruti Paniwala — Mon, 11 Jun 2018 07:59:46 -0500

Finding coding regions in DNA sequences http://genome.crg.es/courses/Lisbon04/exercises/day2/Perl_programming/index.html #Perl #Genes #Script

Wire post by Jit

Jit — Fri, 08 Jun 2018 10:20:19 -0500

reformat.sh in=reads.fq out=highQuality.fq maq=16
(that will throw away all reads with average quality below 16) #Filter #BBMap #Quality

Wire post by Jit

Jit — Fri, 08 Jun 2018 05:32:04 -0500

PacBio genome assembly tools https://academic.oup.com/bib/advance-article/doi/10.1093/bib/bbx147/4590140 #PacBio #Assembly #Tools #SMRT #LongReads

Wire post by Poonam Mahapatra

Poonam Mahapatra — Wed, 30 May 2018 11:13:10 -0500

10 PhD positions in Poland http://www.wb.uj.edu.pl/en_GB/studia/phd-biology/recruitment #Poland #PhD

Wire post by Rahul Nayak

Rahul Nayak — Tue, 29 May 2018 07:41:51 -0500

PacBio Sequencing and Its Applications https://www.sciencedirect.com/science/article/pii/S1672022915001345 #PacBio #Application #NGS

Wire post by Jit

Jit — Mon, 28 May 2018 05:08:49 -0500

LiftOver Howto http://genomewiki.ucsc.edu/index.php/LiftOver_Howto #LiftOver #HowTo

Wire post by Jit

Jit — Wed, 23 May 2018 07:19:58 -0500

#Short #read #alignment: an #introduction https://www.sevenbridges.com/short-read-alignment-algorithms/

Wire post by Jit

Jit — Fri, 18 May 2018 10:25:03 -0500

#N50 = contig length so that half of the contigs are longer and 1/2 of contigs are shorter

Wire post by Poonam Mahapatra

Poonam Mahapatra — Tue, 15 May 2018 09:48:05 -0500

Convert 2bit to psl $ blat myAssembly.2bit -oneOff=0 -noHead myQueryContigSeqs.fa myHits.psl #Convert #psl #2bit #blat

Wire post by Poonam Mahapatra

Poonam Mahapatra — Tue, 15 May 2018 09:46:57 -0500

Convert fasta to 2bit $ faToTwoBit myAssembly.fa myAssembly.2bit #Fasta #2bit #Convert

Wire post by Jit

Jit — Tue, 15 May 2018 03:16:54 -0500

Jitter Plot in R http://r-statistics.co/Top50-Ggplot2-Visualizations-MasterList-R-Code.html#Jitter%20Plot #Plot #Jitter #R #Rscript

Wire post by Rahul Agarwal

Rahul Agarwal — Sat, 12 May 2018 12:39:13 -0500

https://scrapy.org/ #extract #data #from #websites #webscraping

Wire post by Manisha Mishra

Manisha Mishra — Sat, 12 May 2018 05:25:24 -0500

Bioinformatics Faculty Jobs at MAHARSHI DAYANAND UNIVERSITY, ROHTAK http://www.mdurohtak.ac.in/pdf18/Advt/ADvertisement%2028%20of%202018.pdf #MDU #ROHTAK

Wire post by Shruti Paniwala

Shruti Paniwala — Sat, 12 May 2018 05:17:19 -0500

Bioinformatic jobs at TATA MEMORIAL CENTRE
ADVANCED CENTRE FOR TREATMENT, RESEARCH AND EDUCATION IN CANCER (ACTREC) http://www.actrec.gov.in/data%20files/Vacancies/2018/ACTREC-Advt-A-1-(COR)-2018.pdf

Wire post by Jit

Jit — Mon, 07 May 2018 08:25:54 -0500

Activate python version in Conda. $ source activate py27 To deactivate $ source deactivate #Python #Activate #Deactivate #Conda