BOL: All wire posts

Wire post by Jit

Jit — Thu, 15 Feb 2018 10:16:00 -0600

Estimate the genome size https://bioinformatics.uconn.edu/genome-size-estimation-tutorial/ #Genome #Size #Estimate

Wire post by Jit

Jit — Mon, 12 Feb 2018 05:57:42 -0600

#GFA to #Fasta file conversion. $ grep '^S' example.gfa |awk '{print ">"$2; print $3}' > example.fa

Wire post by Rahul Nayak

Rahul Nayak — Tue, 06 Feb 2018 06:59:07 -0600

Bioinformatics resources https://github.com/danielecook/Awesome-Bioinformatics #Bioinformatics #Resources

Wire post by Abhimanyu Singh

Abhimanyu Singh — Mon, 05 Feb 2018 19:02:21 -0600

Important #NGS tutorial http://userweb.eng.gla.ac.uk/umer.ijaz/bioinformatics/linux.html

Wire post by Jit

Jit — Mon, 05 Feb 2018 07:42:32 -0600

#GFA to #FASTA file conversion. awk '/^S/{print ">"$2"\n"$3}' in.gfa | fold > out.fa

Wire post by Rahul Agarwal

Rahul Agarwal — Sat, 27 Jan 2018 10:54:26 -0600

Learn D3.js - https://leanpub.com/D3-Tips-and-Tricks/read #D3dotJS #visualisation #plot

Wire post by Jit

Jit — Tue, 23 Jan 2018 08:46:30 -0600

samtools view -f 256 Input.bam | awk '$6 ~/S/ && $7 == "=" {print $0}' > Secondary_clipped.sam

Wire post by Jit

Jit — Mon, 22 Jan 2018 07:39:31 -0600

Bioinformatics jobs at http://svimsbic.org/SRF_Notification.pdf #SVIMSBIC #Bioinformatics

Wire post by Jit

Jit — Thu, 18 Jan 2018 18:32:25 -0600

git basic commands https://confluence.atlassian.com/bitbucketserver/basic-git-commands-776639767.html #git #commands #gitcommand

Wire post by Rahul Nayak

Rahul Nayak — Tue, 16 Jan 2018 23:52:50 -0600

Assessing an effective undergraduate module #teaching applied #bioinformatics to biology students http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1005872

Wire post by Jit

Jit — Tue, 16 Jan 2018 07:53:01 -0600

get the fasta genes using gff3 and genome.fa sequence: ~/Tools/bedtools2/bin/bedtools getfasta -fi vaga.fa -bed Adineta_vaga.v2.gff3 -fo Adineta_vaga_genes.fa

Wire post by Jit

Jit — Sun, 14 Jan 2018 06:44:32 -0600

Graph visualization with R http://www.bioconductor.org/packages/release/bioc/vignettes/Gviz/inst/doc/Gviz.pdf #R #Graph #Gviz #Visualisation

Wire post by Rahul Agarwal

Rahul Agarwal — Sat, 13 Jan 2018 15:43:50 -0600

https://www.mitomap.org/MITOMAP -A compendium of polymorphisms and mutations in human mitochondrial DNA #mtDNA #DBs

Wire post by Rahul Agarwal

Rahul Agarwal — Sat, 13 Jan 2018 05:02:01 -0600

http://premc.org/conferences/pemed-personalized-precision-medicine/ #Conference #diagnostics #bioinformatics #drug discovery #therapies #NGS #Paris

Wire post by Rahul Agarwal

Rahul Agarwal — Fri, 12 Jan 2018 18:03:59 -0600

https://github.com/vinta/awesome-python #Python #frameworks #libraries #software #resources