BOL: All wire posts

Wire post by Poonam Mahapatra

Poonam Mahapatra — Wed, 03 Jan 2018 00:31:12 -0600

Convert interleaved to separate files with BBmap. $ reformat.sh in=reads.fq out1=reads_r1.fq out2=reads_r2.fq #interleave #fastq #seperate #reformat #bbmap

Wire post by Jit

Jit — Wed, 03 Jan 2018 00:20:20 -0600

Learn algorithms https://github.com/rushter/MLAlgorithms #Algorithms #Learn

Wire post by BioStar

BioStar — Tue, 02 Jan 2018 20:29:09 -0600

Filtration https://github.com/CGRL-QB3-UCBerkeley/denovoTargetCapturePopGen/blob/master/2-ScrubReads

Wire post by Jit

Jit — Mon, 01 Jan 2018 19:22:53 -0600

Definition of homologous #synteny blocks http://science.sciencemag.org/content/sci/suppl/2005/07/20/309.5734.613.DC1/Murphy.SOM.pdf

Wire post by Jitendra Narayan

Jitendra Narayan — Mon, 01 Jan 2018 05:41:31 -0600

BOL wish you a very happy new year. #BOL #BOLover #2018 #Wish

Wire post by Rahul Agarwal

Rahul Agarwal — Thu, 28 Dec 2017 20:05:01 -0600

https://biojs.net/ - A library of over hundred JavaScript components enabling you to visualize and process data using current web technologies #JS #Visualisation #OpenSource

Wire post by Rahul Nayak

Rahul Nayak — Thu, 28 Dec 2017 09:48:52 -0600

Bioinformatics tools collection and database https://bio.tools #tools #database #search #list

Wire post by Rahul Agarwal

Rahul Agarwal — Tue, 26 Dec 2017 16:47:22 -0600

A next generation web framework for the Perl programming language- http://mojolicious.org/ #WebDev #MVC

Wire post by Neel

Neel — Thu, 21 Dec 2017 03:52:03 -0600

Bioinformatics opportunity for AU, India students http://allduniv.ac.in/ckfinder/userfiles/files/Final%20Advt%20171117.pdf #AU #Allahabad #Opportunity

Wire post by Rahul Agarwal

Rahul Agarwal — Wed, 20 Dec 2017 20:44:15 -0600

http://www.bioinfogeeks.com/ #bioinfo #forum

Wire post by Rahul Agarwal

Rahul Agarwal — Wed, 20 Dec 2017 05:33:40 -0600

https://support.bioconductor.org/t/Jobs/ #bioinfo #jobs

Wire post by Jit

Jit — Sun, 17 Dec 2017 17:42:00 -0600

Bioinformatics blog http://onetipperday.sterding.com/ #Blog

Wire post by Jit

Jit — Sat, 16 Dec 2017 16:28:34 -0600

Beginner’s guide to comparative bacterial genome analysis using next-generation sequence data https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3630013/ #Bacteria #NGS #Comparative #Genomics

Wire post by Jit

Jit — Thu, 14 Dec 2017 04:55:21 -0600

#Remove a #sequence by id from multifasta: cat vaga.fa | awk '{if (substr($0,1) == ">scaffold_1 1087316 bp") censor=1; else if (substr($0,1,1) == ">") censor=0; if (censor==0) print $0}' > fixed.fasta

Wire post by Jit

Jit — Thu, 14 Dec 2017 04:00:38 -0600

awk 'BEGIN {RS = ">" ; FS = "\n" ; ORS = ""} {if ($2) print ">"$0}' all_p_ctg.fa > all_p_ctg_CORRECTED.fa #remove #empty #clean #fasta