BOL: All wire posts

Wire post by Shruti Paniwala

Shruti Paniwala — Fri, 30 Jun 2017 11:45:35 -0500

Perl regular expression syntax. https://www.cs.tut.fi/~jkorpela/perl/regexp.html #Perl #Regexp #Learn #Help

Wire post by Jit

Jit — Fri, 30 Jun 2017 08:34:42 -0500

Beginner’s #guide to #comparative #bacterial genome #analysis using #next-generation sequence data https://microbialinformaticsj.biomedcentral.com/articles/10.1186/2042-5783-3-2

Wire post by Jit

Jit — Fri, 30 Jun 2017 07:16:30 -0500

Find a pattern in first 7 characters of reads. bioawk -c fastx 'substr($seq,0,7) == $TAG { print }' reads.fq.gz #Reads #NGS #Extract #Pattern

Wire post by Rahul Nayak

Rahul Nayak — Fri, 30 Jun 2017 04:12:21 -0500

You can use the df command to know the free space in the disk: $ df -h . #df #Linux #List #Free #Space

Wire post by Rahul Nayak

Rahul Nayak — Fri, 30 Jun 2017 04:11:21 -0500

To know the size of the directory in current folder. $ du -sh * #Size #Directory #List #Space #Linux #du

Wire post by Jit

Jit — Thu, 29 Jun 2017 07:55:35 -0500

Learning resources http://archive.ics.uci.edu/ml/index.php #Learn #MAchine #Learning #AI #UCI

Wire post by Jit

Jit — Tue, 27 Jun 2017 04:47:38 -0500

Perl basics http://perldoc.perl.org/perlrequick.html #Perl #quick

Wire post by Shruti Paniwala

Shruti Paniwala — Mon, 26 Jun 2017 05:59:46 -0500

Bioinformatics scientist opening at http://www.ccmb.res.in/positions/regular/notif_2_2017/CSIR-CCMB_sci_advt_02_2017.pdf #Bioinformatics #Scientist #CCMB

Wire post by Shruti Paniwala

Shruti Paniwala — Mon, 26 Jun 2017 04:03:01 -0500

WalkIn at JIPMER http://jipmer.edu.in/wp-content/uploads/2017/06/Multicentric-Recruitment-on-website.pdf #WalkIn #JIPMER

Wire post by Jit

Jit — Sun, 25 Jun 2017 15:15:33 -0500

Remove four beginning characters from each line of the file. $ sed 's/^....//' genbank.txt #Remove #Sed #Text

Wire post by Shruti Paniwala

Shruti Paniwala — Sat, 24 Jun 2017 19:57:33 -0500

Understanding #K-mean #clustering in #Hindi https://www.youtube.com/watch?v=YWgcKSa_2ag

Wire post by Shruti Paniwala

Shruti Paniwala — Fri, 23 Jun 2017 13:10:42 -0500

Understanding BLAST scores http://homepages.ulb.ac.be/~dgonze/TEACHING/stat_scores.pdf #blast #score

Wire post by Rahul Nayak

Rahul Nayak — Fri, 23 Jun 2017 05:06:43 -0500

Count the number of bases in fasta file. grep -v ">" file.fasta | wc | awk '{print $3-$1}' #Fasta #Count #Bases

Wire post by Radha Agarkar

Radha Agarkar — Wed, 21 Jun 2017 09:00:10 -0500

Understanding BitScore https://www.ctu.edu.vn/~dvxe/Bioinformatic%20course/lectures/scores.pdf #Blast #Bit #BitScore

Wire post by Jit

Jit — Sun, 18 Jun 2017 14:14:13 -0500

Append the string to fasta header. $ sed 's/>.*/&_Bacteria/' foo.in > out.fasta #Sed #Fasta #String #Append