BOL: All wire posts

Wire post by Jit

Jit — Fri, 05 May 2017 12:48:55 -0500

Decontamination https://img.jgi.doe.gov/er/doc/SingleCellDataDecontamination.pdf #Bacteria #Contamination

Wire post by Abhimanyu Singh

Abhimanyu Singh — Tue, 02 May 2017 11:31:32 -0500

Show before(B) and after(A) the matching region $ grep -B 3 -A 2 foo README.txt #Linux #Tricks #View #Grep

Wire post by Jit

Jit — Tue, 02 May 2017 09:34:11 -0500

Perl OneLiner http://userweb.eng.gla.ac.uk/umer.ijaz/bioinformatics/oneliners.html #Perl #Oneliner #NGS #Script

Wire post by Jit

Jit — Tue, 02 May 2017 09:05:00 -0500

NGS onliner http://userweb.eng.gla.ac.uk/umer.ijaz/bioinformatics/subsetFASTAFASTAQ.html #OneLiner #NGS

Wire post by Neel

Neel — Mon, 01 May 2017 03:27:41 -0500

splitbed to splitcov https://github.com/cyaguesa/Rscripts/blob/master/splitbed_to_splitcov.R #R #Coverage

Wire post by BioStar

BioStar — Mon, 24 Apr 2017 07:10:36 -0500

Meta-genomics assembly http://denbi-metagenomics-workshop.readthedocs.io/en/latest/index.html #Genomics #Meta #Assembly #Bacteria #Workshop #Tutorial

Wire post by Jit

Jit — Fri, 21 Apr 2017 17:09:11 -0500

Learn Biostats http://www.who.int/ihr/lyon/surveillance/biostatistics/en/ #BioStat #Learn #CD

Wire post by Jit

Jit — Fri, 21 Apr 2017 08:28:28 -0500

To clean up a fasta file so only first column of the header is outputted:$ awk '{print $1}' file.fa > output.fa #Sed #Clean #Header #Fasta

Wire post by Jit

Jit — Fri, 21 Apr 2017 08:24:53 -0500

To add something to end of all header lines: $ sed 's/>.*/&WHATEVERYOUWANT/' file.fa > outfile.fa #Add #Fasta

Wire post by Jit

Jit — Thu, 20 Apr 2017 07:29:03 -0500

use File::Basename; use lib dirname (__FILE__); # To search lib in local folder #Perl #Modules

Wire post by Shruti Paniwala

Shruti Paniwala — Wed, 19 Apr 2017 16:44:53 -0500

Data structure with R http://staff.washington.edu/jon/dsa-perl/dsa-perl.html #R #Data #Structure #Script #Perl

Wire post by Shruti Paniwala

Shruti Paniwala — Wed, 19 Apr 2017 16:38:22 -0500

Interesting PPT on cancer genomics https://www.genome.gov/multimedia/slides/genomicsinmedicine2013-2014/helman_6-7-2013.pdf

Wire post by Neel

Neel — Tue, 11 Apr 2017 08:13:07 -0500

How to calculate the #Euclidean and #Manhattan distance? http://math.stackexchange.com/questions/139600/how-to-calculate-the-euclidean-and-manhattan-distance

Wire post by Jit

Jit — Tue, 11 Apr 2017 06:29:33 -0500

Sample README git file https://gist.github.com/PurpleBooth/109311bb0361f32d87a2 #Git #Readme #Create #GitHub

Wire post by Jit

Jit — Sun, 09 Apr 2017 07:43:21 -0500

http://www.livemint.com/Science/SUy4nLHyny5TJAi3IpNaXO/Indias-bioinformaticists-are-the-heroes-of-the-coming-biote.html