BOL: All wire posts

Wire post by Shruti Paniwala

Shruti Paniwala — Thu, 16 Mar 2017 01:28:38 -0500

BioStats with R https://cran.r-project.org/doc/contrib/Seefeld_StatsRBio.pdf #R #BioStats #Example

Jit — Tue, 14 Mar 2017 11:37:33 -0500

PCA/clustering with R http://www.mattpeeples.net/kmeans.html #R #Cluster #PCA

Jit — Mon, 13 Mar 2017 11:46:36 -0500

#Remove all line that start with # file: $ sed '/^#/ d' filename #line #sed #linux

Abhimanyu Singh — Mon, 13 Mar 2017 08:28:36 -0500

#Random #sequence generator with #perloneliner : $ perl -e '$x=int(rand(1000)); printf( "chr1\t%s\t%s", $x, $x + 10)'

Abhimanyu Singh — Mon, 13 Mar 2017 06:13:21 -0500

#Extract a #sequence from #multi-fasta file: $ perl -ne 'if(/^>(\S+)/){$c=grep{/^$1$/}qw(id1 id2)}print if $c' fasta.file

Jit — Sat, 11 Mar 2017 12:35:25 -0600

Install GIT in Ubuntu $ sudo apt-get install git-all #git

Abhimanyu Singh — Fri, 10 Mar 2017 15:03:02 -0600

Try this on terminal;) $ while (true) do echo -n "BOL is awesome and amazing website "; done

Shruti Paniwala — Thu, 09 Mar 2017 17:39:59 -0600

Online free programming books https://github.com/vhf/free-programming-books/blob/master/free-programming-books.md

Shruti Paniwala — Thu, 09 Mar 2017 17:01:06 -0600

Essential perl http://cslibrary.stanford.edu/108/EssentialPerl.html

Abhimanyu Singh — Thu, 09 Mar 2017 03:56:23 -0600

Selecting the Right #Similarity-Scoring #Matrix https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3848038/

Jit — Wed, 08 Mar 2017 08:11:52 -0600

Get the fasta sequence of the coordinates http://bedtools.readthedocs.io/en/latest/content/tools/getfasta.html #Fasta #Bed #Coordinates #Bedtools

Jit — Wed, 08 Mar 2017 03:44:08 -0600

Know your quota on cluster. $ quota -u user1 #quota #cluster #Server

Abhimanyu Singh — Tue, 07 Mar 2017 10:07:12 -0600

Assembly comparison https://github.com/WGLab/uniline/tree/master/src/assembly_comparison #NGS #Assembly #MUMMer

Jit — Tue, 07 Mar 2017 08:36:31 -0600

Map the #density on #chromosome with perl https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-016-1055-0

Jit — Tue, 07 Mar 2017 08:33:49 -0600

Add color to vim. Open vi .vimrc and at the end of the file add "syntax on" #Vim #Syntax #Highlight #Vi #Linux