BOL: All wire posts

Wire post by Abhimanyu Singh

Abhimanyu Singh — Mon, 06 Mar 2017 10:16:38 -0600

To generate ssh folder in linux $ ssh-keygen #Linux #ssh #Key #Connect

Wire post by Abhimanyu Singh

Abhimanyu Singh — Mon, 06 Mar 2017 05:36:42 -0600

sudo apt-get install libgd-svg-perl to install GD::SVG #Perl #Linux #Install #Graph #Plot

Wire post by Jit

Jit — Mon, 06 Mar 2017 03:59:20 -0600

Scripts required to calculate tetramer frequencies and create input files for ESOM https://github.com/tetramerFreqs/Binning #Bin #Tetramer

Wire post by Jit

Jit — Mon, 06 Mar 2017 03:52:51 -0600

Steps for #Prokaryotic #genome #assembly and #annotation http://www.edamamecourse.org/docs/metagenome_assembly_and_annotation.html

Wire post by Jit

Jit — Sat, 04 Mar 2017 07:47:56 -0600

Understanding #Overlap Layout #Consensus #assembly http://www.cs.jhu.edu/~langmea/resources/lecture_notes/assembly_olc.pdf #OLC #Assembly

Wire post by Jit

Jit — Sat, 04 Mar 2017 04:43:51 -0600

Nice R graphs http://christophergandrud.github.io/networkD3/

Wire post by Jit

Jit — Fri, 03 Mar 2017 08:43:04 -0600

#Clustering metagenomic #contigs on #tetranucleotide frequency
http://cgat.readthedocs.io/en/latest/recipes/metagenome_contigs_kmers.html

Wire post by Jit

Jit — Thu, 02 Mar 2017 10:54:53 -0600

Convert a SAM file to tab-delimited alignment coordinates https://gist.github.com/sjackman/7016520 #SAM #BAM #Convert #Tab

Wire post by Jit

Jit — Thu, 02 Mar 2017 10:53:42 -0600

Understanding MegaBlast https://gordonlab.wustl.edu/btheta/blast/docs/megablast_readme.html #Blast #BLASTn #MegaBlast #Alignment

Wire post by Jit

Jit — Thu, 02 Mar 2017 10:51:33 -0600

Whole-Genome Sequencing (WGS) PPT http://www.bx.psu.edu/~ratan/Sequence%20Analysis.pdf #PPT #WGS #Ratan

Wire post by Jit

Jit — Thu, 02 Mar 2017 05:40:01 -0600

SAM flags https://broadinstitute.github.io/picard/explain-flags.html #SAM #Flags

Wire post by Shruti Paniwala

Shruti Paniwala — Wed, 01 Mar 2017 17:55:34 -0600

Remove all blank lines from file. perl -i.bak -n -e "print if /\S/" ../finalSample.fa #Perl #Tricks #PerlOneliner

Wire post by Jit

Jit — Wed, 01 Mar 2017 11:16:44 -0600

SAM and BAM handling with Perl http://search.cpan.org/~lds/Bio-SamTools/lib/Bio/DB/Sam.pm # Perl #SAM #BAM

Wire post by Jit

Jit — Tue, 28 Feb 2017 09:14:26 -0600

#Download #blastDB #locally. $ wget "ftp://ftp.ncbi.nlm.nih.gov/blast/db/nt.*.tar.gz" for NT and wget "ftp://ftp.ncbi.nlm.nih.gov/blast/db/nr.*.tar.gz" for NR

Wire post by Jit

Jit — Tue, 28 Feb 2017 09:07:34 -0600

Split the bam file by chromosome. $ bamtools split -in file.bam -reference #Split #Bam #Bamtools