<![CDATA[BOL: All wire posts]]> https://bioinformaticsonline.com/thewire/all?offset=915 https://bioinformaticsonline.com/thewire/view/29146 Fri, 09 Sep 2016 06:01:49 -0500 https://bioinformaticsonline.com/thewire/view/29146 <![CDATA[Wire post by Jit]]> Understanding N50 http://jermdemo.blogspot.be/2008/11/calculating-n50-from-velvet-output.html #N50 #Assembly #Genome #Contigs

]]> Jit https://bioinformaticsonline.com/thewire/view/29115 Wed, 07 Sep 2016 03:23:36 -0500 https://bioinformaticsonline.com/thewire/view/29115 <![CDATA[Wire post by Shruti Paniwala]]> Little correction, I guess you mean concatenate many files: $ for a in *.txt ; do cat $a >> newFile ; done #Linux #Tricks

]]> Shruti Paniwala https://bioinformaticsonline.com/thewire/view/29105 Tue, 06 Sep 2016 04:51:36 -0500 https://bioinformaticsonline.com/thewire/view/29105 <![CDATA[Wire post by Neel]]> Contact many files: $ for a in *.txt ; do cat $a >> newFile ; done #Linux #Tricks

]]> Neel https://bioinformaticsonline.com/thewire/view/29031 Mon, 05 Sep 2016 10:11:15 -0500 https://bioinformaticsonline.com/thewire/view/29031 <![CDATA[Wire post by Jit]]> Find a file with certain size and delete them: $ find . -name "see-D-d-ALN_*" -size -10k -delete #Delete #Size #Linux #Tricks

]]> Jit https://bioinformaticsonline.com/thewire/view/29023 Mon, 05 Sep 2016 04:32:17 -0500 https://bioinformaticsonline.com/thewire/view/29023 <![CDATA[Wire post by Abhimanyu Singh]]> Circos like image with R circlize package https://cran.r-project.org/web/packages/circlize/vignettes/visualize_relations_by_chord_diagram.pdf #R #Circlize #Plot #Circos

]]> Abhimanyu Singh https://bioinformaticsonline.com/thewire/view/29020 Mon, 05 Sep 2016 04:10:10 -0500 https://bioinformaticsonline.com/thewire/view/29020 <![CDATA[Wire post by Abhimanyu Singh]]> #DotPlot #tutorial http://www.code10.info/index.php%3Foption%3Dcom_content%26view%3Darticle%26id%3D64:inroduction-to-dot-plots%26catid%3D52:cat_coding_algorithms_dot-plots%26Itemid%3D76

]]> Abhimanyu Singh https://bioinformaticsonline.com/thewire/view/29002 Thu, 01 Sep 2016 11:20:25 -0500 https://bioinformaticsonline.com/thewire/view/29002 <![CDATA[Wire post by Jit]]> Plot genomoc data https://cran.r-project.org/web/packages/circlize/vignettes/genomic_plot.pdf #Circlize #R #Genome #Plot

]]> Jit https://bioinformaticsonline.com/thewire/view/28993 Thu, 01 Sep 2016 07:35:10 -0500 https://bioinformaticsonline.com/thewire/view/28993 <![CDATA[Wire post by Jitendra Narayan]]> Comparative genomics resources https://www.dcode.org/ #Genomics #Resources #DCODE #Genome #Compare

]]> Jitendra Narayan https://bioinformaticsonline.com/thewire/view/28935 Wed, 31 Aug 2016 08:19:19 -0500 https://bioinformaticsonline.com/thewire/view/28935 <![CDATA[Wire post by Jit]]> The clean R graphs http://shinyapps.org/apps/RGraphCompendium/index.php #R #Graphs #Clean #Plot

]]> Jit https://bioinformaticsonline.com/thewire/view/28924 Mon, 29 Aug 2016 11:46:14 -0500 https://bioinformaticsonline.com/thewire/view/28924 <![CDATA[Wire post by Poonam Mahapatra]]> DiscovarDenovo assembly ppt https://banana-slug.soe.ucsc.edu/_media/team_5_report_1.pdf #PPT #Assembly #Help #Steps

]]> Poonam Mahapatra https://bioinformaticsonline.com/thewire/view/28917 Mon, 29 Aug 2016 04:16:45 -0500 https://bioinformaticsonline.com/thewire/view/28917 <![CDATA[Wire post by Poonam Mahapatra]]> Gaze for gene prediction http://www.ncbi.nlm.nih.gov/pmc/articles/PMC186661/ # Genes #Predictions #Genome #Tools #Gaze

]]> Poonam Mahapatra https://bioinformaticsonline.com/thewire/view/28882 Wed, 24 Aug 2016 05:30:23 -0500 https://bioinformaticsonline.com/thewire/view/28882 <![CDATA[Wire post by Shruti Paniwala]]> Genome basic stats http://www.cbs.dtu.dk/courses/genomics_course/Day3.pdf #Genome #Stats #Plot #R

]]> Shruti Paniwala https://bioinformaticsonline.com/thewire/view/28868 Mon, 22 Aug 2016 09:23:58 -0500 https://bioinformaticsonline.com/thewire/view/28868 <![CDATA[Wire post by Jit]]> du -sh * will give you the size of all the directories,files etc in current directory in human readable format. #Linux #Size #Tricks #Folders #Files

]]> Jit https://bioinformaticsonline.com/thewire/view/28853 Fri, 19 Aug 2016 07:36:54 -0500 https://bioinformaticsonline.com/thewire/view/28853 <![CDATA[Wire post by Archana Malhotra]]> NGS exercise http://wiki.bits.vib.be/index.php/NGS_Exercise.5 #NGS #VIB #Training #Exercise

]]> Archana Malhotra https://bioinformaticsonline.com/thewire/view/28825 Wed, 17 Aug 2016 10:18:48 -0500 https://bioinformaticsonline.com/thewire/view/28825 <![CDATA[Wire post by Jit]]> Bioinformatics openings at #IGIB https://www.igib.res.in/sites/default/files/30082016.pdf #Delhi #India #IGIB

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