BOL: All wire posts

Wire post by Jitendra Prajapati

Jitendra Prajapati — Thu, 14 Apr 2016 19:14:13 -0500

Genes and Genome https://genestogenomes.org/tag/chromosomes/

Wire post by Rahul Nayak

Rahul Nayak — Sun, 10 Apr 2016 19:09:28 -0500

Fast utilities https://github.com/jimhester/fasta_utilities/tree/master/scripts #Scripts

Wire post by Jit

Jit — Wed, 06 Apr 2016 13:09:46 -0500

#R #PiratePlot are cool, and impressive http://www.r-bloggers.com/the-pirate-plot-2-0-the-rdi-plotting-choice-of-r-pirates/

Wire post by Neel

Neel — Wed, 06 Apr 2016 05:23:03 -0500

PAired-eND Assembler for DNA sequences https://github.com/neufeld/pandaseq #Sequence #Assembler #PANDAseq

Wire post by Abhi

Abhi — Tue, 05 Apr 2016 10:50:53 -0500

#ConPADE: Genome #Assembly Ploidy Estimation from #Next-Generation Sequencing Data http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1004229

Wire post by Abhi

Abhi — Tue, 05 Apr 2016 10:36:25 -0500

Hapsembler http://compbio.cs.toronto.edu/hapsembler/hapsembler-2.1_manual.pdf

Wire post by Abhi

Abhi — Tue, 05 Apr 2016 10:23:02 -0500

PLATform for Assembling NUcleotide Sequences http://platanus.bio.titech.ac.jp/ #Platanus #Assembler #Genome

Wire post by Abhi

Abhi — Tue, 05 Apr 2016 09:56:36 -0500

A universal genomic #coordinate translator for comparative genomics https://github.com/nedaz/kraken #Genes #Translator #Synteny

Wire post by Abhi

Abhi — Tue, 05 Apr 2016 08:46:42 -0500

Annotation transfer pipeline MAKER http://gmod.org/wiki/MAKER_Tutorial_2013 #Maker #Annotation #Pipeline

Wire post by Archana Malhotra

Archana Malhotra — Fri, 01 Apr 2016 11:14:43 -0500

Dynamic programming http://www.avatar.se/molbioinfo2001/dynprog/dynamic.html #Programming #Alignment #Sequence #Dynamic

Wire post by Abhimanyu Singh

Abhimanyu Singh — Fri, 25 Mar 2016 11:36:18 -0500

#Print all line #except those #contains a letter "T" that is not immediately followed by a "H" with: grep -v 'T[^H]'

Wire post by Surabhi Chaudhary

Surabhi Chaudhary — Wed, 23 Mar 2016 05:48:58 -0500

#BAM file to #fastaq #conversion with #Samtool: samtools view filename.bam | awk '{OFS="\t"; print "@"$1"\n"$10"\n+\n"$11}' >| filename.fastq

Wire post by Surabhi Chaudhary

Surabhi Chaudhary — Wed, 23 Mar 2016 05:47:41 -0500

#BAM file to fasta #conversion with #Samtool: samtools view filename.bam | \
awk '{OFS="\t"; print ">"$1"\n"$10}' - > filename.fasta

Wire post by Surabhi Chaudhary

Surabhi Chaudhary — Wed, 23 Mar 2016 05:39:36 -0500

#Installing #python #pip https://pip.pypa.io/en/stable/installing/

Wire post by Neel

Neel — Tue, 22 Mar 2016 04:35:32 -0500

A powerful #multiple #sequence #alignment #browser http://wasabiapp.org/