BOL: Aaryan Lokwani's wire posts

Wire post by Aaryan Lokwani

Aaryan Lokwani — Fri, 22 Jun 2018 05:53:37 -0500

Sed illegal charters from fasta. $ sed '/^[^>]/ s/[^AGTC]/N/gi' < seq.fa #fasta #otherthanATGC #replace #sed #Linux #illegal

Wire post by Aaryan Lokwani

Aaryan Lokwani — Fri, 22 Jun 2018 05:16:58 -0500

export PERL5LIB=/home/foobar/code #SetPath #Perl

Wire post by Aaryan Lokwani

Aaryan Lokwani — Fri, 22 Jun 2018 04:41:13 -0500

Count the contigs length in index fasta file with samtools. $ awk '{s+=$2}END{print s}' scaffolds.fasta.fai #Fasta #Index #Length #Count #Size #Samtools

Wire post by Aaryan Lokwani

Aaryan Lokwani — Thu, 21 Jun 2018 08:56:41 -0500

#Scientific #converter https://www.rapidtables.com/convert/number/scientific-notation-converter.html

Wire post by Aaryan Lokwani

Aaryan Lokwani — Sat, 31 May 2014 02:44:31 -0500

List of bioinformatics companies worldwide http://grouthbio.com/Genome_Software_Service.php #Companies #Worldwide #Bioinformatics #List #Name

Wire post by Aaryan Lokwani

Aaryan Lokwani — Sat, 12 Apr 2014 21:56:29 -0500

Squid – a simple bioinformatics grid http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1190159/?tool=pubmed