BOL: Abhi's wire posts

Wire post by Abhi

Abhi — Sun, 22 Jun 2025 04:20:10 -0500

Convert #GFF2BED (base) [b@hn1 DUMP]$ awk 'BEGIN {OFS = "\t"};$3=="gene"{print $1,$4-1,$5}' genomic.gff > genes.bed

Wire post by Abhi

Abhi — Mon, 13 May 2024 13:59:54 -0500

Dengue Virus Genome https://www.ncbi.nlm.nih.gov/genomes/GenomesGroup.cgi?taxid=12637 #Dengue

Wire post by Abhi

Abhi — Wed, 01 May 2024 02:36:32 -0500

Use a Python Package to Access the RCSB #PDB Search API https://www.rcsb.org/news/feature/65a1acf5c76ca3abcc925d0b

Wire post by Abhi

Abhi — Tue, 25 Apr 2023 12:40:14 -0500

Nice #Upset #plot tutorial https://jokergoo.github.io/ComplexHeatmap-reference/book/upset-plot.html#example-with-the-genomic-regions

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Abhi — Fri, 11 Nov 2022 07:13:09 -0600

Alternative to Github https://codeberg.org/ #Alternative #Github

Wire post by Abhi

Abhi — Wed, 12 Jan 2022 03:26:43 -0600

https://dst.gov.in/sites/default/files/NSM_Course_AAI_0122.pdf #AI #courses

Wire post by Abhi

Abhi — Sat, 08 Jan 2022 22:56:08 -0600

Bioinformatics books https://cbirt.net/bioinformatics-books/ #Bioinformatics #Books

Wire post by Abhi

Abhi — Thu, 16 Dec 2021 23:35:40 -0600

Special nucleotide characters http://www.hgmd.cf.ac.uk/docs/nuc_lett.html #Special #Nucleotide

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Abhi — Tue, 16 Nov 2021 01:09:20 -0600

The CPC sever accepts RNA #transcript sequences as input, and outputs assessed #protein-coding potential of the transcripts. http://cpc2.gao-lab.org/about.php

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Abhi — Tue, 16 Nov 2021 01:08:04 -0600

Merge transcriptome assemblies https://github.com/cboursnell/transfuse #Transfuse #Fuse #Merge

Wire post by Abhi

Abhi — Tue, 16 Nov 2021 01:06:24 -0600

Tools for building de novo transcriptome assembly https://www.sciencedirect.com/science/article/pii/S2214662817301032 #Trnscripttomics #Assembly

Wire post by Abhi

Abhi — Tue, 16 Nov 2021 01:04:54 -0600

#Snakemake #Learn https://ucdavis-bioinformatics-training.github.io/2020-Genome_Assembly_Workshop/snakemake/snakemake_intro

Wire post by Abhi

Abhi — Wed, 06 Oct 2021 05:12:18 -0500

The #Uniclust90, #Uniclust50, #Uniclust30 databases cluster #UniProtKB sequences at the level of 90%, 50% and 30% pairwise sequence identity.

Wire post by Abhi

Abhi — Tue, 20 Sep 2016 05:47:03 -0500

Bioinformatics trainee needed at Kalyani http://www.klyuniv.ac.in/upload/employment/AdvtBIFCentre_9.9.2016.pdf #Trainee #Kaluani

Wire post by Abhi

Abhi — Wed, 15 Jun 2016 03:46:24 -0500

Bioinformatics studentship and traineeship at http://www.pondiuni.edu.in/sites/default/files/career-bioinformts-Studentship_130616.pdf #PU #India #Studentship