BOL: Jitendra Narayan's wire posts

Wire post by Jitendra Narayan

Jitendra Narayan — Thu, 19 Jun 2014 04:33:49 -0500

Ten Years of Pathway Analysis: Current Approaches and Outstanding Challenges. http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002375 #Pathway #Challenges #Tools

Wire post by Jitendra Narayan

Jitendra Narayan — Thu, 19 Jun 2014 04:32:17 -0500

A tool to edit and analyze biological pathways. http://www.pathvisio.org/ #Pathway #Analyse #Tool #Edit #Biological

Wire post by Jitendra Narayan

Jitendra Narayan — Fri, 06 Jun 2014 16:28:28 -0500

Assemble short reads http://ged.msu.edu/angus/tutorials/short-read-assembly.html #Tutorial #ABySS #Bacteria #Reads #Assembly #Genomics #NGS

Wire post by Jitendra Narayan

Jitendra Narayan — Wed, 04 Jun 2014 14:15:45 -0500

Use multi-core with Perl programs http://perltricks.com/article/61/2014/1/21/Make-your-code-run-faster-with-Perl-s-secret-turbo-module #Perl #MCE #Speed #Module

Wire post by Jitendra Narayan

Jitendra Narayan — Tue, 03 Jun 2014 15:36:05 -0500

Love to ping nucleosome positioning using PING 2.0 http://bioinformatics.oxfordjournals.org/content/29/16/2049.abstract #Nucleosome #Position #Chromosome #R #Package #Bioconductor

Wire post by Jitendra Narayan

Jitendra Narayan — Mon, 02 Jun 2014 13:47:42 -0500

R getting strong for NGS analysis http://manuals.bioinformatics.ucr.edu/home/ht-seq #Packages #NGS #R #Bioconductor #Bowtie #Sequence #Analysis #SNP

Wire post by Jitendra Narayan

Jitendra Narayan — Mon, 02 Jun 2014 13:39:44 -0500

Creates 100 random DNA sequences with 20 residues. sapply(1:100, function(x) paste(sample(c("A","T","G","C"), 20, replace=T), collapse="")) #R #Random #Sequence #DNA #Script

Wire post by Jitendra Narayan

Jitendra Narayan — Fri, 30 May 2014 06:08:14 -0500

Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format. https://github.com/lh3/seqtk #FASTA #FASTAQ #NGS

Wire post by Jitendra Narayan

Jitendra Narayan — Tue, 27 May 2014 12:41:03 -0500

Certain organisms routinely break universal biological rules. http://www.nature.com/news/microbes-defy-rules-of-dna-code-1.15283?WT.ec_id=NEWS-20140527 #News #Rules

Wire post by Jitendra Narayan

Jitendra Narayan — Mon, 05 May 2014 22:33:44 -0500

Paving the Way Towards a Successful and Fulfilling Career in Computational Biology http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1003593 #Career

Wire post by Jitendra Narayan

Jitendra Narayan — Fri, 25 Apr 2014 10:54:51 -0500

Happy DNA day !!!

Wire post by Jitendra Narayan

Jitendra Narayan — Tue, 15 Apr 2014 00:01:36 -0500

Bioinformatics tweeted times at http://tweetedtimes.com/#!/search/bioinformatics/en

Wire post by Jitendra Narayan

Jitendra Narayan — Sat, 15 Mar 2014 02:59:02 -0500

A great place to learn coding http://www.codecademy.com #Coding #Learn #Online

Wire post by Jitendra Narayan

Jitendra Narayan — Fri, 21 Feb 2014 05:28:57 -0600

UC Irvine Machine Learning Repository! http://archive.ics.uci.edu/ml/ #MachineLearning #Data

Wire post by Jitendra Narayan

Jitendra Narayan — Sun, 02 Feb 2014 05:46:01 -0600

Ten Simple Rules for Writing Research Papers http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1003453 #Paper