BOL: Jitendra Narayan's wire posts

Wire post by Jitendra Narayan

Jitendra Narayan — Wed, 17 Sep 2014 17:19:34 -0500

Genome-wide amplifications caused by chromosomal rearrangements play a major role in the adaptive evolution of natural yeast. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1462916/ #Evolution #Chromosom

Wire post by Jitendra Narayan

Jitendra Narayan — Wed, 17 Sep 2014 15:50:49 -0500

Comparative Genomics http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.0000058 #Comparative #Genomics

Wire post by Jitendra Narayan

Jitendra Narayan — Mon, 15 Sep 2014 17:07:51 -0500

SAGE: String-overlap Assembly of GEnomes http://www.biomedcentral.com/1471-2105/15/302/abstract #Genome #SAGE #Assembly

Wire post by Jitendra Narayan

Jitendra Narayan — Mon, 15 Sep 2014 16:57:30 -0500

Analysis of horse genomes provides insight into the diversification and adaptive evolution of karyotype http://www.nature.com/srep/2014/140514/srep04958/full/srep04958.html? #Adaptation #Horse #Evolut

Wire post by Jitendra Narayan

Jitendra Narayan — Mon, 15 Sep 2014 16:41:45 -0500

A survey of tools for variant analysis of next-generation genome sequencing data http://bib.oxfordjournals.org/content/15/2/256.short #NGS #Tools #Survey #Variant

Wire post by Jitendra Narayan

Jitendra Narayan — Mon, 15 Sep 2014 16:20:45 -0500

Reference-free Prediction of Rearrangement Breakpoint Reads http://bioinformatics.oxfordjournals.org/content/early/2014/05/28/bioinformatics.btu360.short #Reference #Breakpoint #Reads #Rearrangement

Wire post by Jitendra Narayan

Jitendra Narayan — Mon, 15 Sep 2014 16:12:40 -0500

An update of the goat genome assembly using dense radiation hybrid maps allows detailed analysis of evolutionary rearrangements in Bovidae http://www.biomedcentral.com/1471-2164/15/625/ #Bovidae #Evol

Wire post by Jitendra Narayan

Jitendra Narayan — Mon, 15 Sep 2014 15:41:45 -0500

CYNTENATOR: Progressive Gene Order Alignment of 17 Vertebrate Genomes http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0008861#pone-0008861-g003 #Alignment #CYNTENATOR #Genome

Wire post by Jitendra Narayan

Jitendra Narayan — Fri, 12 Sep 2014 13:36:42 -0500

KEEL is an open source (GPLv3) Java software tool to assess evolutionary algorithms for Data Mining problems. http://www.keel.es #Keel #Mining

Wire post by Jitendra Narayan

Jitendra Narayan — Fri, 12 Sep 2014 09:52:02 -0500

SANTA: Quantifying the Functional Content of Molecular Networks http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1003808 #Network #Pathway #Molecular #SANTA

Wire post by Jitendra Narayan

Jitendra Narayan — Fri, 12 Sep 2014 05:12:01 -0500

Chromosome Visualization Tool: A Whole Genome Viewer http://www.hindawi.com/journals/ijpg/2011/373875/ #Chromosome #Visualize #Plot #Perl

Wire post by Jitendra Narayan

Jitendra Narayan — Sun, 07 Sep 2014 23:16:15 -0500

Scientists Looking Across Human, Fly And Worm Genomes Find Shared Biology http://www.biocompare.com/Life-Science-News/167414-Scientists-Looking-Across-Human-Fly-And-Worm-Genomes-Find-Shared-Biology/ #

Wire post by Jitendra Narayan

Jitendra Narayan — Thu, 04 Sep 2014 18:24:32 -0500

A statistical method for the detection of variants from next-generation resequencing of DNA pools http://bioinformatics.oxfordjournals.org/content/26/12/i318.abstract #NGS #Variants #DNApools #Statist

Wire post by Jitendra Narayan

Jitendra Narayan — Wed, 03 Sep 2014 17:57:46 -0500

Genome alignment with graph data structures: a comparison http://www.biomedcentral.com/1471-2105/15/99 #Genome #Alignment #Data #Graph

Wire post by Jitendra Narayan

Jitendra Narayan — Wed, 03 Sep 2014 17:56:54 -0500

Ragout—a reference-assisted assembly tool for bacterial genomes http://bioinformatics.oxfordjournals.org/content/30/12/i302.short #Genome #Assembly #Reference #Ragout #Bacteria