BOL: Jitendra Narayan's wire posts

Wire post by Jitendra Narayan

Jitendra Narayan — Wed, 03 Sep 2014 17:55:46 -0500

Evaluating synteny for improved comparative studies http://bioinformatics.oxfordjournals.org/content/30/12/i9.short #Genomics #Synteny #ComparativeStudy

Wire post by Jitendra Narayan

Jitendra Narayan — Wed, 03 Sep 2014 16:03:55 -0500

ECR Browser: a tool for visualizing and accessing data from comparisons of multiple vertebrate genomes http://nar.oxfordjournals.org/content/32/suppl_2/W280.short #Browser #Visualization #Genome #Synt

Wire post by Jitendra Narayan

Jitendra Narayan — Wed, 03 Sep 2014 05:02:10 -0500

replace a word in all files in a directory: grep -lr --exclude-dir=".git" -e "oldword" . | xargs sed -i "s/oldword/newword/g" #Replace #Word #Linux

Wire post by Jitendra Narayan

Jitendra Narayan — Thu, 28 Aug 2014 08:09:31 -0500

Check out the google trends for Bioinformatics, Computational Biology, and Bioinformatics Jobs http://goo.gl/sha8pC #Trends #Bioinformatics #ComputationalBiology #Jobs

Wire post by Jitendra Narayan

Jitendra Narayan — Mon, 25 Aug 2014 06:43:28 -0500

Mercator that constructs orthology maps between multiple whole genomes https://www.biostat.wisc.edu/~cdewey/mercator/ #Synteny #Orthology #Map #Construction #Alignment

Wire post by Jitendra Narayan

Jitendra Narayan — Sun, 24 Aug 2014 06:17:20 -0500

Genomics England are set to sequence the genomes of 100,000 Brits over the next five years. www.genomicsengland.co.uk #Genome #England #Sequencing #Brit

Wire post by Jitendra Narayan

Jitendra Narayan — Sun, 24 Aug 2014 05:51:23 -0500

NEMO: a tool for analyzing gene and chromosome territory distributions from 3D-FISH experiments http://bioinformatics.oxfordjournals.org/content/26/5/696.full #NEMO #Chromatin #Territory

Wire post by Jitendra Narayan

Jitendra Narayan — Sun, 24 Aug 2014 05:48:48 -0500

HiBrowse: Multi-purpose statistical analysis of genome-wide chromatin 3D organization http://bioinformatics.oxfordjournals.org/content/early/2014/02/07/bioinformatics.btu082.full.pdf #Chromatin #HiBro

Wire post by Jitendra Narayan

Jitendra Narayan — Wed, 13 Aug 2014 15:59:02 -0500

Professor David Porteous explains that breakpoints in the genome http://www.dnalc.org/view/1241-Breakpoints.html #Breakpoint #Genome #Chromosome

Wire post by Jitendra Narayan

Jitendra Narayan — Tue, 12 Aug 2014 15:29:51 -0500

MafFilter: a highly flexible and extensible multiple genome alignment files processor http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3904536/ #MultipleGenomeAlignment #MAF #Genome #Alignment

Wire post by Jitendra Narayan

Jitendra Narayan — Thu, 07 Aug 2014 17:48:00 -0500

Bioinformatics jobs http://evoldir.tumblr.com/ #Evolution #EvolDir

Wire post by Jitendra Narayan

Jitendra Narayan — Wed, 06 Aug 2014 08:22:50 -0500

Online bioinformatics courses http://www.ebi.ac.uk/training/online/course-list #Online #Courses #Bioinformatics

Wire post by Jitendra Narayan

Jitendra Narayan — Thu, 24 Jul 2014 07:29:18 -0500

The tool automatically downloads and unpacks the selected NCBI Blast databases from NCBI ftp server http://www.dnabaser.com/download/NCBI-BLAST-downloader/ #NCBI #Database #Download

Wire post by Jitendra Narayan

Jitendra Narayan — Wed, 23 Jul 2014 06:50:44 -0500

BOL chrome app has been listed amongst top 10 Google Chrome Extensions for Biology Students http://www.biochemden.in/2013/04/top-10-google-chrome-extensions-for.html#comment-11704 #BOL

Wire post by Jitendra Narayan

Jitendra Narayan — Mon, 14 Jul 2014 15:26:12 -0500

Maq: Mapping and Assembly with Qualities http://maq.sourceforge.net/ #Maq #Mapping #Assembly #Qualities