BOL: BioStar's wire posts

Wire post by BioStar

BioStar — Tue, 11 Dec 2018 08:08:10 -0600

Bioinformatics Laboratories https://www.crick.ac.uk/research/labs?topic=19 #Lab #Bioinfo

Wire post by BioStar

BioStar — Wed, 05 Dec 2018 08:11:08 -0600

Bioinformatics online tutorial https://bioinformaticsonline.com/pages/view/1537/virtual-bioinformatics-online-tutorial #Bioinformatics #Tutorial

Wire post by BioStar

BioStar — Thu, 15 Nov 2018 18:09:25 -0600

#Programming exercises for the Stanford Unsupervised Feature Learning and #Deep #Learning #Tutorial http://ufldl.stanford.edu/tutorial https://github.com/amaas/stanford_dl_ex

Wire post by BioStar

BioStar — Mon, 15 Oct 2018 07:00:57 -0500

Check the file systems and sizes. $ df --block-size=G #Linux #Size #df

Wire post by BioStar

BioStar — Wed, 26 Sep 2018 05:50:30 -0500

Split the fasta $ pyfasta split -k 100 -o 20 input.fasta -n 1 #split #pyfasta #overlaps

Wire post by BioStar

BioStar — Sat, 22 Sep 2018 07:03:57 -0500

Remove empty line from fasta. $ sed -i '/^$/d' standard_output.final.scaffolds_online.fasta #Empty #Fasta #Remove

Wire post by BioStar

BioStar — Sat, 22 Sep 2018 06:44:28 -0500

MultiLine fasta to oneline fasta converter awk '/^>/ {printf("\n%s\n",$0);next; } { printf("%s",$0);} END {printf("\n");}' < file.fa #Multiline #Oneline

Wire post by BioStar

BioStar — Fri, 21 Sep 2018 10:21:12 -0500

Understanding Paired End and Mate pair reads http://www.biorigami.com/wp-content/uploads/2012/02/PAIREDEND-MATEPAIR.pdf #Reads #Mate #Pairs #PE #Reads #MatePair

Wire post by BioStar

BioStar — Sun, 09 Sep 2018 16:37:10 -0500

https://github.com/Ensembl/ensembl-vep #Variant #Effect #Predictor #Github

Wire post by BioStar

BioStar — Sun, 09 Sep 2018 16:10:50 -0500

Variant Effect Predictor http://www.ensembl.org/Tools/VEP #Variant #Effect #Predictor

Wire post by BioStar

BioStar — Wed, 05 Sep 2018 10:52:26 -0500

#Nigerian Society for #Bioinformatics and Computational Biology (#NISBCB) http://cubre.covenantuniversity.edu.ng/index.php/nigeria-society-for-bioinformatics-and-computatational-biology-nisbcb/#.W4_7m

Wire post by BioStar

BioStar — Wed, 05 Sep 2018 10:46:03 -0500

Bioinformatics in Nigeria http://bioinformatics.ui.edu.ng/ #Nigeria #Bioinformatics

Wire post by BioStar

BioStar — Wed, 05 Sep 2018 10:42:03 -0500

Computational Biology and Bioinformatics in Nigeria https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3998874/ #Nigeria #Bioinformatics #Scope

Wire post by BioStar

BioStar — Tue, 02 Jan 2018 20:29:09 -0600

Filtration https://github.com/CGRL-QB3-UCBerkeley/denovoTargetCapturePopGen/blob/master/2-ScrubReads

Wire post by BioStar

BioStar — Mon, 24 Apr 2017 07:10:36 -0500

Meta-genomics assembly http://denbi-metagenomics-workshop.readthedocs.io/en/latest/index.html #Genomics #Meta #Assembly #Bacteria #Workshop #Tutorial