BOL: BioStar's wire posts

Wire post by BioStar

BioStar — Wed, 31 Jan 2024 00:41:00 -0600

#Multi-line fasta to #Single-line Fasta $ awk '/^>/ {if (NR>1) print ""; printf("%s\n", $0); next; } { printf("%s", $0) } END { printf("\n"); }' multi_line.fasta > single_line.fasta

Wire post by BioStar

BioStar — Mon, 22 Jan 2024 03:25:18 -0600

Delete all the headers from multifasta file $ awk 'BEGIN {print ">"ARGV[1]};!/^>/{print}' test.fa #fasta #delete #header #multifasta

Wire post by BioStar

BioStar — Thu, 18 Jan 2024 01:24:51 -0600

Data resource for metagenomics benchmarking https://ftp.ebi.ac.uk/pub/databases/metagenomics/taxon_benchmarking/ #Tools #Metagenome

Wire post by BioStar

BioStar — Tue, 28 Nov 2023 09:32:22 -0600

Generate a #quick #monkeypox #alignment https://github.com/aineniamh/squirrel

Wire post by BioStar

BioStar — Fri, 10 Nov 2023 02:20:09 -0600

List of bioinformatics journals with impacts https://scholar.google.com/citations?view_op=top_venues&hl=en&vq=eng_bioinformatics #Journals #List #Impact

Wire post by BioStar

BioStar — Sat, 04 Mar 2023 03:34:59 -0600

Public data repository https://health.google.com/covid-19/open-data/raw-data #Data #Repository #Analysis

Wire post by BioStar

BioStar — Sat, 18 Feb 2023 07:17:03 -0600

Which human genome to opt for http://lh3.github.io/2017/11/13/which-human-reference-genome-to-use #Genome #Human

Wire post by BioStar

BioStar — Sat, 14 Jan 2023 16:46:57 -0600

Interactive Linear Algebra
Dan Margalit https://textbooks.math.gatech.edu/ila/

Wire post by BioStar

BioStar — Sat, 12 Nov 2022 09:14:24 -0600

#HUPAN: a pan-genome analysis pipeline for human genomes https://genomebiology.biomedcentral.com/articles/10.1186/s13059-019-1751-y

Wire post by BioStar

BioStar — Fri, 11 Nov 2022 08:05:59 -0600

#HAIRSPLITTER: SEPARATING NOISY LONG READS INTO AN UNKNOWN NUMBER OF #HAPLOTYPES https://hal-insa-rennes.archives-ouvertes.fr/hal-03817928/

Wire post by BioStar

BioStar — Fri, 11 Nov 2022 07:57:28 -0600

Now 400,000 #Salmonella genomes available for analysis on Enterobase‼️ https://enterobase.warwick.ac.uk

Wire post by BioStar

BioStar — Mon, 23 Aug 2021 10:55:09 -0500

RNA seq tutorial https://github.com/griffithlab/rnaseq_tutorial #Tutorial #RNA_seq

Wire post by BioStar

BioStar — Thu, 19 Aug 2021 02:55:23 -0500

HOW TO CONVERT A PYTHON SCRIPT TO MODULE https://tutswiki.com/convert-python-script-to-module/ #Module #Python

Wire post by BioStar

BioStar — Wed, 18 Aug 2021 08:05:37 -0500

DOME: recommendations for supervised machine learning validation in biology https://www.nature.com/articles/s41592-021-01205-4 #Machine #Learn #Recommendation

Wire post by BioStar

BioStar — Wed, 18 Aug 2021 04:33:26 -0500

Genome assembly PPT http://rayan.chikhi.name/pdf/2018-evomics-assembly-kmers.pdf #Genome #Assembly #PPT #Ryan