BOL: Neel's wire posts

Wire post by Neel

Neel — Tue, 10 Mar 2020 22:04:01 -0500

https://gisanddata.maps.arcgis.com/apps/opsdashboard/index.html#/bda7594740fd40299423467b48e9ecf6 #corona #covid-19 #virus

Wire post by Neel

Neel — Mon, 09 Mar 2020 00:38:13 -0500

Machine learning with {tidymodels} https://www.r-bloggers.com/machine-learning-with-tidymodels/ #Machine #Learn #MachineLearning #R

Wire post by Neel

Neel — Wed, 04 Mar 2020 09:07:48 -0600

Building a #consensus sequence with #vcf files https://cbc.brown.edu/blog/consensus-vcf/

Wire post by Neel

Neel — Sun, 02 Feb 2020 13:21:11 -0600

Cancer poisson distribution https://www.r-bloggers.com/cancer-clusters-and-the-poisson-distributions/ #cancer #poisson

Wire post by Neel

Neel — Wed, 29 Jan 2020 05:12:29 -0600

Install Git on Ubuntu $ apt-get install git-core #Ubuntu #Git #Install

Wire post by Neel

Neel — Tue, 21 Jan 2020 06:56:24 -0600

Awk hack for bioinformatician https://www.shellhacks.com/awk-print-column-change-field-separator-linux-bash/ #Hack #Bioinfo #Bash

Wire post by Neel

Neel — Sun, 19 Jan 2020 06:55:50 -0600

Bio-python tutorial for beginners http://biopython.org/DIST/docs/tutorial/Tutorial.html #Python #Bio #BioPython #Tutorial

Wire post by Neel

Neel — Wed, 15 Jan 2020 10:22:17 -0600

What is bioinformatics #Understanding #Bioinformatics https://academic.oup.com/bib/article/20/6/1981/5066445

Wire post by Neel

Neel — Fri, 29 Nov 2019 22:14:54 -0600

Perl onliner to add string to each of the fasta header. $ perl -p -e 's/^(>.*)$/$1-origin/g' in.fasta > out.fasta #String #Header #Fasta

Wire post by Neel

Neel — Mon, 25 Nov 2019 22:26:37 -0600

Multifasta 2 singlefasta cat toy.fasta| awk '{ if (substr($0, 1, 1)==">" {filename=(substr($0,2) ".fa")} print $0 > filename }' #Split #fasta #multifasta

Wire post by Neel

Neel — Sat, 16 Nov 2019 02:35:17 -0600

Kill the screen $ screen -X -S [session # you want to kill] quit #Screen #Quit #Linux #Session #Remote

Wire post by Neel

Neel — Fri, 15 Nov 2019 23:13:24 -0600

#Rename the #fasta #header and #keep first $ perl -ne 'if (/^(>\S+)/){print "$1\n";}else{print $_;}' realTestDATA.fa > realTestDATA_headerCorrected.fa #Perl

Wire post by Neel

Neel — Thu, 17 Oct 2019 05:43:59 -0500

List all files by size in Linux $ ls -l -S | sort -k 5 -n #Linux #Size #List

Wire post by Neel

Neel — Wed, 02 Oct 2019 10:00:34 -0500

Ten simple rules to create biological network figures for communication https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1007244 #Rules #Publication

Wire post by Neel

Neel — Mon, 09 Sep 2019 04:38:46 -0500

Perl special variable https://perldoc.perl.org/perlvar.html #Perl #variable