<![CDATA[BOL: John Parker's wire posts]]> https://bioinformaticsonline.com/thewire/owner/parker? https://bioinformaticsonline.com/thewire/view/17219 Sun, 21 Sep 2014 16:19:13 -0500 https://bioinformaticsonline.com/thewire/view/17219 <![CDATA[Wire post by John Parker]]> Search a PATTERN in a file and print the line. perl -ne '/PATTERN/ && print' fileName #Perl #Pattern #Print #Search #Line

]]> John Parker https://bioinformaticsonline.com/thewire/view/17217 Sun, 21 Sep 2014 14:01:36 -0500 https://bioinformaticsonline.com/thewire/view/17217 <![CDATA[Wire post by John Parker]]> MAP2: multiple alignment of syntenic genomic sequences http://nar.oxfordjournals.org/content/33/1/162.full #Alignment #Synteny #Sequence

]]> John Parker https://bioinformaticsonline.com/thewire/view/14066 Sat, 16 Aug 2014 04:36:32 -0500 https://bioinformaticsonline.com/thewire/view/14066 <![CDATA[Wire post by John Parker]]> Epiviz: interactive visual analytics for functional genomics data http://www.nature.com/nmeth/journal/vaop/ncurrent/full/nmeth.3038.html #Visual #Analytics #Genomics #NGS

]]> John Parker https://bioinformaticsonline.com/thewire/view/13952 Tue, 12 Aug 2014 16:40:53 -0500 https://bioinformaticsonline.com/thewire/view/13952 <![CDATA[Wire post by John Parker]]> Genome data mining for everyone http://www.bmbreports.org/fulltext/bmbreports/view.php?vol=41&page=757 #Report #Genome #Research #BMC

]]> John Parker https://bioinformaticsonline.com/thewire/view/13950 Tue, 12 Aug 2014 16:37:46 -0500 https://bioinformaticsonline.com/thewire/view/13950 <![CDATA[Wire post by John Parker]]> galign: A Tool for Rapid Genome Polymorphism Discovery http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2746318/ #SNP #Variation #galign #Genome

]]> John Parker https://bioinformaticsonline.com/thewire/view/13948 Tue, 12 Aug 2014 16:32:40 -0500 https://bioinformaticsonline.com/thewire/view/13948 <![CDATA[Wire post by John Parker]]> Validated whole genome structural variation detection using multiple callers http://bcbio.wordpress.com/ #VariationCalling #Genome #SNP

]]> John Parker https://bioinformaticsonline.com/thewire/view/13914 Mon, 11 Aug 2014 15:56:57 -0500 https://bioinformaticsonline.com/thewire/view/13914 <![CDATA[Wire post by John Parker]]> Regulatory Sequence Analysis Tools http://rsat.ulb.ac.be/rsat/ #RSAT #SequenceAnalysis

]]> John Parker https://bioinformaticsonline.com/thewire/view/11787 Fri, 13 Jun 2014 12:31:15 -0500 https://bioinformaticsonline.com/thewire/view/11787 <![CDATA[Wire post by John Parker]]> A New Online Computational Biology Curriculum http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1003662 #Computational #Biology #Curriculum

]]> John Parker https://bioinformaticsonline.com/thewire/view/11730 Thu, 12 Jun 2014 12:37:31 -0500 https://bioinformaticsonline.com/thewire/view/11730 <![CDATA[Wire post by John Parker]]> A Quick Guide to Genomics and Bioinformatics Training for Clinical and Public Audiences http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1003510 #Training

]]> John Parker https://bioinformaticsonline.com/thewire/view/11577 Fri, 06 Jun 2014 15:39:52 -0500 https://bioinformaticsonline.com/thewire/view/11577 <![CDATA[Wire post by John Parker]]> NGS analysis pipeline http://www.egr.msu.edu/changroup/Protocols/NGS%20analysis%20example%20of%20a%20pipeline.html #Pipeline #NGS #Genomics #Tutorial

]]> John Parker https://bioinformaticsonline.com/thewire/view/11337 Sat, 31 May 2014 17:30:12 -0500 https://bioinformaticsonline.com/thewire/view/11337 <![CDATA[Wire post by John Parker]]> Useful R resources @ http://www.stat.wisc.edu/network-skills/learnR #R #Stats #Learn #Tutorial #Material #Learn #Course

]]> John Parker https://bioinformaticsonline.com/thewire/view/11321 Sat, 31 May 2014 17:19:17 -0500 https://bioinformaticsonline.com/thewire/view/11321 <![CDATA[Wire post by John Parker]]> Bacterial genome assembly tips using Valvet http://pathogenomics.bham.ac.uk/blog/2009/09/tips-for-de-novo-bacterial-genome-assembly/ #Assembly #NGS #Bacteria #Genome #Tricks #Tips #Velvet

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