<![CDATA[BOL: Poonam Mahapatra's wire posts]]> https://bioinformaticsonline.com/thewire/owner/poonam?offset=15 https://bioinformaticsonline.com/thewire/view/28166 Wed, 29 Jun 2016 15:31:47 -0500 https://bioinformaticsonline.com/thewire/view/28166 <![CDATA[Wire post by Poonam Mahapatra]]> #Extract #Chromosome #Number And Start Position #Reads: samtools view bamfile.bam|awk '{print $3 "\t" $4 "\t" $4+length($10)-1}' > newfile.tab

]]> Poonam Mahapatra https://bioinformaticsonline.com/thewire/view/28028 Fri, 24 Jun 2016 09:16:32 -0500 https://bioinformaticsonline.com/thewire/view/28028 <![CDATA[Wire post by Poonam Mahapatra]]> #Extract all #Reads from #BAM file for a #region Chr10:18000-45500 using #samtools: samtools view input.bam "Chr10:18000-45500" > output.bam

]]> Poonam Mahapatra https://bioinformaticsonline.com/thewire/view/26691 Mon, 14 Mar 2016 13:40:19 -0500 https://bioinformaticsonline.com/thewire/view/26691 <![CDATA[Wire post by Poonam Mahapatra]]> #Newick #Utilities #Tutorial http://cegg.unige.ch/system/files/nwutils_tutorial.pdf

]]> Poonam Mahapatra https://bioinformaticsonline.com/thewire/view/23422 Wed, 22 Jul 2015 19:58:52 -0500 https://bioinformaticsonline.com/thewire/view/23422 <![CDATA[Wire post by Poonam Mahapatra]]> Bioinforamtics jobs at IIIM http://www.iiim.res.in/job/PA_Advt_5-2015.pdf #IIIM #Jammu #WalkIn #Bioinformatics #Opportunity

]]> Poonam Mahapatra https://bioinformaticsonline.com/thewire/view/20516 Sun, 25 Jan 2015 22:22:50 -0600 https://bioinformaticsonline.com/thewire/view/20516 <![CDATA[Wire post by Poonam Mahapatra]]> What does the perfect bioinformatician look like http://www.eaglegenomics.com/what-does-the-perfect-bioinformatician-look-like/ #Bioinformatician #Look

]]> Poonam Mahapatra https://bioinformaticsonline.com/thewire/view/16311 Fri, 12 Sep 2014 00:30:50 -0500 https://bioinformaticsonline.com/thewire/view/16311 <![CDATA[Wire post by Poonam Mahapatra]]> Vim-R-Tmux: An Integrated Working Environment for R http://manuals.bioinformatics.ucr.ed/home/programming-in-r/vim-r #R #vimR #Interface

]]> Poonam Mahapatra https://bioinformaticsonline.com/thewire/view/14299 Sat, 23 Aug 2014 04:16:31 -0500 https://bioinformaticsonline.com/thewire/view/14299 <![CDATA[Wire post by Poonam Mahapatra]]> 1000genomes http://www.1000genomes.org/category/phenotype #1000Genome #Data #Genome

]]> Poonam Mahapatra https://bioinformaticsonline.com/thewire/view/13301 Thu, 31 Jul 2014 06:00:30 -0500 https://bioinformaticsonline.com/thewire/view/13301 <![CDATA[Wire post by Poonam Mahapatra]]> High-throughput sequence analysis with R and Bioconductor http://www.bioconductor.org/help/course-materials/2012/CSC2012/Bioconductor-tutorial.pdf #R #Bioconductor #NGS #Analysis

]]> Poonam Mahapatra https://bioinformaticsonline.com/thewire/view/4091 Thu, 29 Aug 2013 08:36:18 -0500 https://bioinformaticsonline.com/thewire/view/4091 <![CDATA[Wire post by Poonam Mahapatra]]> Number all lines in a file; perl -pe '$_ = "$. $_"': #Tipsoftheday #Perl

]]> Poonam Mahapatra https://bioinformaticsonline.com/thewire/view/2421 Thu, 15 Aug 2013 10:30:34 -0500 https://bioinformaticsonline.com/thewire/view/2421 <![CDATA[Wire post by Poonam Mahapatra]]> A quick guide to Perl http://tinyurl.com/mkmjtpv #Perl #QuickGuide

]]> Poonam Mahapatra https://bioinformaticsonline.com/thewire/view/1196 Thu, 01 Aug 2013 02:59:36 -0500 https://bioinformaticsonline.com/thewire/view/1196 <![CDATA[Wire post by Poonam Mahapatra]]> Felling excited to join BOL, a new interactive activity center for bioinformatician. #BOLover

]]> Poonam Mahapatra