BOL: Radha Agarkar's wire posts

Wire post by Radha Agarkar

Radha Agarkar — Fri, 04 Jan 2019 09:04:31 -0600

Open source tools for videos making https://www.openshot.org/ #Open #Videos

Wire post by Radha Agarkar

Radha Agarkar — Sun, 03 Dec 2017 15:39:46 -0600

Remove the fasta with zero size: awk 'BEGIN {RS = ">" ; FS = "\n" ; ORS = ""} $2 {print ">"$0}' input.fas > output.fas #fasta #remove

Wire post by Radha Agarkar

Radha Agarkar — Wed, 21 Jun 2017 09:00:10 -0500

Understanding BitScore https://www.ctu.edu.vn/~dvxe/Bioinformatic%20course/lectures/scores.pdf #Blast #Bit #BitScore

Wire post by Radha Agarkar

Radha Agarkar — Fri, 04 Nov 2016 05:34:46 -0500

Bioinformatics scientist at NIAB http://www.niab.org.in/Notifications/Advt_3_2016/Notification_3_2016.pdf #Scientist #Nabi #India

Wire post by Radha Agarkar

Radha Agarkar — Fri, 16 Sep 2016 03:00:15 -0500

Extract sequence by using Ids file (assuming one ids in a line): perl -ne 'if(/^>(\S+)/){$c=$i{$1}}$c?print:chomp;$i{$_}=1 if @ARGV' ids.file fasta.file #PerlTricks #PerlOneliner #Perl #Extract #Ids #

Wire post by Radha Agarkar

Radha Agarkar — Fri, 16 Sep 2016 02:57:36 -0500

Extract fasta sequence by Ids: perl -ne 'if(/^>(\S+)/){$c=grep{/^$1$/}qw(id1 id2)}print if $c' fasta.file #Perl #PerlOneliner #PerlTrick #Extract #Ids #Fasta

Wire post by Radha Agarkar

Radha Agarkar — Sat, 21 May 2016 22:19:11 -0500

Web BLAST ftp://ftp.ncbi.nlm.nih.gov/blast/documents/web_blast.pl #BLAST #Web #Online

Wire post by Radha Agarkar

Radha Agarkar — Thu, 17 Mar 2016 09:56:06 -0500

Drag and drop programming language http://snap.berkeley.edu/ #Programming #Language

Wire post by Radha Agarkar

Radha Agarkar — Tue, 21 Jul 2015 07:39:16 -0500

Bioinformatics WalkIn at NIBMG http://www.nibmg.ac.in/academic/WALK-IN-ADVT-0815.pdf #WalkIn #Bioinforamtics #Jobs #Opportunity #NIBMG

Wire post by Radha Agarkar

Radha Agarkar — Wed, 17 Jun 2015 20:51:45 -0500

Check out Bioinformatics opening at http://gujaratgenomics.in/recruit/ #Gujrat #Bioinformatics #GSBTM

Wire post by Radha Agarkar

Radha Agarkar — Sat, 16 Aug 2014 22:18:44 -0500

Bioinformatics Infrastructure Facility (BIF) http://btisnet.gov.in/bif.asp #BIF #India #Bioinformatics

Wire post by Radha Agarkar

Radha Agarkar — Mon, 12 May 2014 07:21:25 -0500

A unique bioinformatics server http://www.biorxiv.org/collection/bioinformatics

Wire post by Radha Agarkar

Radha Agarkar — Sat, 10 May 2014 21:26:24 -0500

Webinar http://webinars.sciencemag.org/webinar/archive/importance-bioinformatics-ngs #NGS #Webinar

Wire post by Radha Agarkar

Radha Agarkar — Sun, 24 Nov 2013 08:37:05 -0600

Landmarks in genomics http://www.nature.com/nature/journal/v422/n6934/pdf/timeline_01626.pdf #Genomics #Landmarks